Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   COA_RS0101350 Genome accession   NZ_AKBV01000001
Coordinates   265594..266199 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 260594..271199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COA_RS01000000122320 rsmS 261299..261460 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  COA_RS0101325 priC 261474..262001 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  COA_RS0101330 ybaN 262071..262448 (+) 378 WP_001188905.1 DUF454 family protein -
  COA_RS0101335 apt 262601..263152 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  COA_RS0101340 dnaX 263281..265212 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  COA_RS0101345 ybaB 265265..265594 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  COA_RS0101350 recR 265594..266199 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  COA_RS0101355 htpG 266309..268183 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  COA_RS0101360 adk 268364..269008 (+) 645 WP_001220233.1 adenylate kinase -
  COA_RS0101365 hemH 269244..270206 (+) 963 WP_001250103.1 ferrochelatase -
  COA_RS0101370 aes 270203..271162 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=54393 COA_RS0101350 WP_001195025.1 265594..266199(+) (recR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=54393 COA_RS0101350 WP_001195025.1 265594..266199(+) (recR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment