Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HK939_RS05905 Genome accession   NZ_CP086657
Coordinates   1145407..1145787 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain P4581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140407..1150787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS05880 (HK939_005870) aspS 1140920..1142671 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  HK939_RS05885 (HK939_005875) - 1142668..1143243 (+) 576 WP_002776379.1 adenylate kinase -
  HK939_RS05890 (HK939_005880) ppa 1143253..1143771 (+) 519 WP_002776378.1 inorganic diphosphatase -
  HK939_RS05895 (HK939_005885) msrA 1143819..1144319 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HK939_RS05900 (HK939_005890) - 1144542..1145396 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HK939_RS05905 (HK939_005895) dprB 1145407..1145787 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  HK939_RS05910 (HK939_005900) dprA 1145784..1146554 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  HK939_RS05915 (HK939_005905) - 1146544..1147596 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  HK939_RS05920 (HK939_005910) ilvC 1147599..1148621 (-) 1023 WP_229133595.1 ketol-acid reductoisomerase -
  HK939_RS05925 (HK939_005915) - 1148744..1150678 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=543897 HK939_RS05905 WP_002776373.1 1145407..1145787(-) (dprB) [Campylobacter coli strain P4581]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=543897 HK939_RS05905 WP_002776373.1 1145407..1145787(-) (dprB) [Campylobacter coli strain P4581]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421