Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HK939_RS03850 Genome accession   NZ_CP086657
Coordinates   740893..741441 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain P4581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 735893..746441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS03820 (HK939_003805) ctsT 735936..736241 (-) 306 WP_002834517.1 hypothetical protein Machinery gene
  HK939_RS03825 (HK939_003810) proC 736238..736975 (-) 738 WP_002834520.1 pyrroline-5-carboxylate reductase Machinery gene
  HK939_RS03830 (HK939_003815) fliW 736975..737364 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  HK939_RS03835 (HK939_003820) - 737528..738175 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  HK939_RS03840 (HK939_003825) lon 738191..740566 (+) 2376 WP_002783351.1 endopeptidase La -
  HK939_RS03845 (HK939_003830) rpsR 740622..740882 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  HK939_RS03850 (HK939_003835) ssb 740893..741441 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  HK939_RS03855 (HK939_003840) rpsF 741450..741827 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  HK939_RS03860 (HK939_003845) - 742107..743380 (+) 1274 Protein_753 MFS transporter -
  HK939_RS03870 (HK939_003855) - 743380..744381 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  HK939_RS03875 (HK939_003860) - 744374..745231 (-) 858 WP_229133671.1 VirK family antimicrobial peptide resistance protein -
  HK939_RS03880 (HK939_003865) rseP 745228..746331 (-) 1104 WP_002780260.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=543890 HK939_RS03850 WP_002777084.1 740893..741441(-) (ssb) [Campylobacter coli strain P4581]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=543890 HK939_RS03850 WP_002777084.1 740893..741441(-) (ssb) [Campylobacter coli strain P4581]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379