Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZ786_RS02740 Genome accession   NZ_CP071182
Coordinates   621188..622558 (+) Length   456 a.a.
NCBI ID   WP_206657306.1    Uniprot ID   A0A9X7W021
Organism   Alicyclobacillus mengziensis strain S30H14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 616188..627558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ786_RS02720 (JZ786_02720) - 616460..616921 (+) 462 WP_206657302.1 CtsR family transcriptional regulator -
  JZ786_RS02725 (JZ786_02725) - 616991..617512 (+) 522 WP_206657303.1 UvrB/UvrC motif-containing protein -
  JZ786_RS02730 (JZ786_02730) - 617515..618591 (+) 1077 WP_206657304.1 protein arginine kinase -
  JZ786_RS02735 (JZ786_02735) - 618591..621029 (+) 2439 WP_206657305.1 ATP-dependent Clp protease ATP-binding subunit -
  JZ786_RS02740 (JZ786_02740) radA 621188..622558 (+) 1371 WP_206657306.1 DNA repair protein RadA Machinery gene
  JZ786_RS02745 (JZ786_02745) disA 622604..623683 (+) 1080 WP_206657307.1 DNA integrity scanning diadenylate cyclase DisA -
  JZ786_RS02750 (JZ786_02750) pssA 623714..624445 (+) 732 WP_206657308.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JZ786_RS02755 (JZ786_02755) - 624790..625896 (+) 1107 WP_206657309.1 PIN/TRAM domain-containing protein -
  JZ786_RS02760 (JZ786_02760) ispD 626076..626771 (+) 696 WP_206657310.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JZ786_RS02765 (JZ786_02765) ispF 626772..627263 (+) 492 WP_206657311.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49199.36 Da        Isoelectric Point: 6.6940

>NTDB_id=543556 JZ786_RS02740 WP_206657306.1 621188..622558(+) (radA) [Alicyclobacillus mengziensis strain S30H14]
MPKSGTRFVCQSCGYESPKWNGRCPQCQEWNSFVEEWAGPQKGPLAGPKSLVSTVMQVALPITQIPSQQEQRISTGITEY
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQSSYELARSGNRVLYVSGEESATQLKLRAERLLATHENLNVLAETDMDHIL
TVIEDKKPDFVIIDSIQTVYRPTMSSAPGSVSQVRECTGVLLRVAKTLNIATFIVGHVTKEGNLAGPRMLEHMVDAVLYF
EGDRHHSYRILRAVKNRFGSTNEIAIFEMNEEGLQQVSNPSEMFLSERSESAAGSAVVAAVEGSRPLLLEVQALVAPTSF
VTPRRMTTGADANRVSLILAVLEKRLGFRLQTSDAYVNFAGGVRVDEPAADLGIAVAIASSLRDAPLSSHDVMIGEIGLT
GEVRSVSKLEQRIKEADKLGFTRCIVPRHGLRGLKSSGAIEVVGVSTLAEAMGLVF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=543556 JZ786_RS02740 WP_206657306.1 621188..622558(+) (radA) [Alicyclobacillus mengziensis strain S30H14]
ATGCCGAAATCGGGAACCCGATTTGTCTGTCAGAGTTGCGGGTACGAGTCACCAAAATGGAACGGGCGCTGTCCGCAGTG
TCAGGAGTGGAACAGCTTTGTCGAGGAGTGGGCGGGACCCCAGAAAGGGCCGCTAGCTGGTCCAAAGTCACTAGTTTCTA
CGGTGATGCAGGTGGCACTCCCGATTACTCAGATTCCATCGCAACAAGAACAGCGCATATCAACAGGAATTACAGAGTAC
AATCGGGTGTTGGGCGGTGGCGTCGTACCCGGGTCTCTGGTGTTGATCGGTGGTGACCCCGGAATTGGCAAATCTACTCT
ACTCCTCCAATCGTCCTACGAACTTGCCCGGAGCGGGAATCGTGTACTTTACGTTTCTGGCGAAGAGTCTGCGACGCAGT
TGAAACTCCGTGCTGAGCGGTTGCTTGCAACACATGAAAACCTGAATGTTCTTGCAGAGACGGACATGGATCACATCTTG
ACGGTCATCGAAGACAAAAAACCAGATTTTGTCATCATCGACTCGATTCAGACCGTTTATCGCCCAACGATGTCTTCGGC
ACCTGGGTCCGTGTCTCAAGTTCGTGAGTGCACCGGTGTGCTTTTGCGCGTTGCCAAAACGCTGAATATCGCCACGTTCA
TCGTTGGGCACGTAACGAAAGAAGGGAATCTCGCCGGTCCGCGGATGCTTGAGCACATGGTTGATGCCGTACTATACTTT
GAAGGAGACCGACATCACTCGTACAGGATCCTACGCGCCGTGAAAAATCGCTTTGGATCCACGAATGAGATTGCCATCTT
TGAAATGAATGAAGAGGGGTTGCAACAGGTTTCCAATCCTTCAGAAATGTTTCTGTCGGAACGGTCTGAATCTGCTGCTG
GGTCCGCTGTTGTTGCCGCGGTAGAAGGCTCACGGCCACTCCTCCTCGAAGTTCAGGCCCTCGTCGCTCCCACCAGCTTT
GTGACACCGAGACGAATGACCACTGGGGCTGACGCCAACCGCGTGAGCTTGATTTTAGCTGTACTCGAGAAGCGGTTGGG
ATTTCGACTCCAGACTTCAGACGCTTACGTGAATTTTGCAGGTGGAGTGCGTGTGGATGAACCTGCTGCTGACCTTGGCA
TCGCGGTAGCCATTGCGTCAAGCTTGCGGGATGCGCCATTGTCTTCGCATGACGTGATGATTGGCGAAATTGGGTTAACC
GGTGAGGTGCGCTCGGTCTCTAAACTTGAACAACGGATTAAGGAAGCAGATAAACTTGGATTCACCCGTTGCATCGTACC
GCGGCACGGCTTGCGTGGACTGAAGTCTTCGGGAGCCATTGAAGTGGTTGGTGTTTCAACTCTGGCTGAGGCAATGGGCC
TGGTTTTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

61.013

99.561

0.607
  radA Streptococcus mitis NCTC 12261

58.043

100

0.586
  radA Streptococcus mitis SK321

57.826

100

0.583
  radA Streptococcus pneumoniae Rx1

57.826

100

0.583
  radA Streptococcus pneumoniae D39

57.826

100

0.583
  radA Streptococcus pneumoniae R6

57.826

100

0.583
  radA Streptococcus pneumoniae TIGR4

57.826

100

0.583