Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JZX95_RS06505 Genome accession   NZ_CP071179
Coordinates   1306382..1308073 (+) Length   563 a.a.
NCBI ID   WP_003766795.1    Uniprot ID   A0AB73H4H6
Organism   Listeria innocua strain LI47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1301382..1313073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX95_RS06480 - 1301532..1302413 (+) 882 WP_003771729.1 polyprenyl synthetase family protein -
  JZX95_RS06485 - 1302612..1302812 (+) 201 WP_003719639.1 cold-shock protein -
  JZX95_RS06490 dxs 1302978..1304898 (+) 1921 Protein_1277 1-deoxy-D-xylulose-5-phosphate synthase -
  JZX95_RS06495 - 1304895..1305719 (+) 825 WP_003771733.1 TlyA family RNA methyltransferase -
  JZX95_RS06500 argR 1305910..1306359 (+) 450 WP_003766793.1 transcriptional regulator ArgR -
  JZX95_RS06505 recN 1306382..1308073 (+) 1692 WP_003766795.1 DNA repair protein RecN Machinery gene
  JZX95_RS06510 - 1308203..1309069 (+) 867 WP_045554145.1 phosphate acyltransferase -
  JZX95_RS06515 buk 1309206..1310273 (+) 1068 WP_010991519.1 butyrate kinase -
  JZX95_RS06520 lpdA 1310287..1311714 (+) 1428 WP_045554146.1 dihydrolipoyl dehydrogenase -
  JZX95_RS06525 - 1311739..1312734 (+) 996 WP_003762136.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63582.35 Da        Isoelectric Point: 5.2644

>NTDB_id=543526 JZX95_RS06505 WP_003766795.1 1306382..1308073(+) (recN) [Listeria innocua strain LI47]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=543526 JZX95_RS06505 WP_003766795.1 1306382..1308073(+) (recN) [Listeria innocua strain LI47]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAAACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGCTTATTTGCCCTAGCAGAAGATAATCTTGCCTGCCGCAATGCG
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAACTAGTAACTACGGTGTTGCTACGTCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AACACCAAGAATTAATGAATGAAGAATTTCATTTATCGCTACTAGATAGGTTTGCTGCTGATAAAATTAAACCCGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCAAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGCCAGATGGAAGCGGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAAGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGTGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATCAGTC
GTATGATTGCTGGGATAGAAGTGACCGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531