Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZX95_RS01075 Genome accession   NZ_CP071179
Coordinates   232900..234273 (+) Length   457 a.a.
NCBI ID   WP_003760072.1    Uniprot ID   Q92F42
Organism   Listeria innocua strain LI47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 227900..239273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX95_RS01055 - 228246..228704 (+) 459 WP_003760062.1 CtsR family transcriptional regulator -
  JZX95_RS01060 - 228717..229235 (+) 519 WP_003760064.1 UvrB/UvrC motif-containing protein -
  JZX95_RS01065 - 229232..230254 (+) 1023 WP_010990301.1 protein arginine kinase -
  JZX95_RS01070 - 230283..232745 (+) 2463 WP_003770116.1 ATP-dependent Clp protease ATP-binding subunit -
  JZX95_RS01075 radA 232900..234273 (+) 1374 WP_003760072.1 DNA repair protein RadA Machinery gene
  JZX95_RS01080 - 234407..235480 (+) 1074 WP_003770118.1 PIN/TRAM domain-containing protein -
  JZX95_RS01085 ispD 235500..236198 (+) 699 WP_045554053.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JZX95_RS01090 ispF 236191..236664 (+) 474 WP_003760080.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JZX95_RS01095 gltX 236683..238158 (+) 1476 WP_045554052.1 glutamate--tRNA ligase -
  JZX95_RS01100 epsC 238557..239171 (+) 615 WP_003760085.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=543517 JZX95_RS01075 WP_003760072.1 232900..234273(+) (radA) [Listeria innocua strain LI47]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=543517 JZX95_RS01075 WP_003760072.1 232900..234273(+) (radA) [Listeria innocua strain LI47]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTACTTGTTGGTGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTACAAGTGTCGGCACAACTTACACTTACTAATAAGAAAGTATTATATATTTCCGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTGCAAGTTTCCGGTGATAATTTGTATGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACGGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAAATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGA
AACGCCAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q92F42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643