Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JZY03_RS07555 Genome accession   NZ_CP071178
Coordinates   1625038..1625664 (+) Length   208 a.a.
NCBI ID   WP_045134652.1    Uniprot ID   -
Organism   Enterobacter kobei strain CDL29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620038..1630664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY03_RS07535 (JZY03_07520) - 1620436..1622196 (-) 1761 WP_045134653.1 Lon protease family protein -
  JZY03_RS07540 (JZY03_07525) matP 1622383..1622835 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  JZY03_RS07545 (JZY03_07530) ompA 1622900..1623955 (-) 1056 WP_014883252.1 porin OmpA -
  JZY03_RS07550 (JZY03_07535) sulA 1624311..1624820 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  JZY03_RS07555 (JZY03_07540) sxy/tfoX 1625038..1625664 (+) 627 WP_045134652.1 TfoX/Sxy family DNA transformation protein Regulator
  JZY03_RS07560 (JZY03_07545) yccS 1625621..1627783 (-) 2163 WP_045134651.1 YccS family putative transporter -
  JZY03_RS07565 (JZY03_07550) - 1627803..1628249 (-) 447 WP_014883256.1 YccF domain-containing protein -
  JZY03_RS07570 (JZY03_07555) helD 1628373..1630427 (+) 2055 WP_045134650.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23916.50 Da        Isoelectric Point: 9.0691

>NTDB_id=543492 JZY03_RS07555 WP_045134652.1 1625038..1625664(+) (sxy/tfoX) [Enterobacter kobei strain CDL29]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=543492 JZY03_RS07555 WP_045134652.1 1625038..1625664(+) (sxy/tfoX) [Enterobacter kobei strain CDL29]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGGTAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGTTAATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562