Detailed information NTG0543447

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: LN358_RS01200
• Genome accession: NZ_CP086623
• Coordinates: 259352..260335 (+)
• Length: 327 a.a.
• NCBI ID: WP_001196487.1
• Uniprot ID: -
• Organism: Escherichia coli strain RIVM_C037794
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 254352..265335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN358_RS01185 (LN358_01185)	dppA	255652..257259 (+)	1608	WP_001222876.1	dipeptide ABC transporter substrate-binding protein DppA	-
LN358_RS01190 (LN358_01190)	dppB	257410..258429 (+)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
LN358_RS01195 (LN358_01195)	dppC	258439..259341 (+)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
LN358_RS01200 (LN358_01200)	amiE	259352..260335 (+)	984	WP_001196487.1	dipeptide ABC transporter ATP-binding protein	Regulator
LN358_RS01205 (LN358_01205)	dppF	260332..261336 (+)	1005	WP_000103574.1	dipeptide ABC transporter ATP-binding subunit DppF	-
LN358_RS01210 (LN358_01210)	yhjV	261366..262637 (-)	1272	WP_001521562.1	aromatic amino acid transport family protein	-
LN358_RS01215 (LN358_01215)	-	263113..263220 (+)	108	WP_000170738.1	type I toxin-antitoxin system toxin Ldr family protein	-
LN358_RS01220 (LN358_01220)	-	263597..263704 (+)	108	WP_000170738.1	type I toxin-antitoxin system toxin Ldr family protein	-
LN358_RS01225 (LN358_01225)	-	264080..264187 (+)	108	WP_001521561.1	type I toxin-antitoxin system toxin Ldr family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35860.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=543447 LN358_RS01200 WP_001196487.1 259352..260335(+) (amiE) [Escherichia coli strain RIVM_C037794]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=543447 LN358_RS01200 WP_001196487.1 259352..260335(+) (amiE) [Escherichia coli strain RIVM_C037794]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGACCAAAACTGCTGATTGCCGATGAGCCGACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTGTTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.614	98.165	0.428
amiE	Streptococcus thermophilus LMG 18311	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMD-9	43.302	98.165	0.425
oppD	Streptococcus mutans UA159	41.693	97.554	0.407