Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZX96_RS01650 Genome accession   NZ_CP071157
Coordinates   306962..308335 (+) Length   457 a.a.
NCBI ID   WP_003760072.1    Uniprot ID   Q92F42
Organism   Listeria innocua strain LI203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 301962..313335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX96_RS01630 - 302308..302766 (+) 459 WP_211088639.1 CtsR family transcriptional regulator -
  JZX96_RS01635 - 302779..303297 (+) 519 WP_003760064.1 UvrB/UvrC motif-containing protein -
  JZX96_RS01640 - 303294..304316 (+) 1023 WP_010990301.1 protein arginine kinase -
  JZX96_RS01645 - 304345..306807 (+) 2463 WP_194320114.1 ATP-dependent Clp protease ATP-binding subunit -
  JZX96_RS01650 radA 306962..308335 (+) 1374 WP_003760072.1 DNA repair protein RadA Machinery gene
  JZX96_RS01655 - 308469..309542 (+) 1074 WP_003770118.1 PIN/TRAM domain-containing protein -
  JZX96_RS01660 ispD 309562..310260 (+) 699 WP_033533523.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JZX96_RS01665 ispF 310253..310726 (+) 474 WP_003770122.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JZX96_RS01670 gltX 310745..312220 (+) 1476 WP_194320113.1 glutamate--tRNA ligase -
  JZX96_RS01675 epsC 312619..313233 (+) 615 WP_194320112.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=543382 JZX96_RS01650 WP_003760072.1 306962..308335(+) (radA) [Listeria innocua strain LI203]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=543382 JZX96_RS01650 WP_003760072.1 306962..308335(+) (radA) [Listeria innocua strain LI203]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTGCTTGTTGGCGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTTCAAGTGTCGGCACAACTTACCCTTACTAATAAGAAAGTATTATATATCTCTGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTACAAGTTTCCGGTGATAATTTGTACGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACTGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACTGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAGATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGG
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q92F42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643