Detailed information NTG0543363

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: LN352_RS01190
• Genome accession: NZ_CP086622
• Coordinates: 258511..259494 (+)
• Length: 327 a.a.
• NCBI ID: WP_001196487.1
• Uniprot ID: -
• Organism: Escherichia coli strain RIVM_C037884
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 253511..264494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN352_RS01175 (LN352_01175)	dppA	254811..256418 (+)	1608	WP_001222876.1	dipeptide ABC transporter substrate-binding protein DppA	-
LN352_RS01180 (LN352_01180)	dppB	256569..257588 (+)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
LN352_RS01185 (LN352_01185)	dppC	257598..258500 (+)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
LN352_RS01190 (LN352_01190)	amiE	258511..259494 (+)	984	WP_001196487.1	dipeptide ABC transporter ATP-binding protein	Regulator
LN352_RS01195 (LN352_01195)	dppF	259491..260495 (+)	1005	WP_000103574.1	dipeptide ABC transporter ATP-binding subunit DppF	-
LN352_RS01200 (LN352_01200)	yhjV	260525..261796 (-)	1272	WP_001521562.1	aromatic amino acid transport family protein	-
LN352_RS01205 (LN352_01205)	-	262272..262379 (+)	108	WP_000170738.1	type I toxin-antitoxin system toxin Ldr family protein	-
LN352_RS01210 (LN352_01210)	-	262756..262863 (+)	108	WP_000170738.1	type I toxin-antitoxin system toxin Ldr family protein	-
LN352_RS01215 (LN352_01215)	-	263239..263346 (+)	108	WP_001521561.1	type I toxin-antitoxin system toxin Ldr family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35860.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=543363 LN352_RS01190 WP_001196487.1 258511..259494(+) (amiE) [Escherichia coli strain RIVM_C037884]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=543363 LN352_RS01190 WP_001196487.1 258511..259494(+) (amiE) [Escherichia coli strain RIVM_C037884]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGACCAAAACTGCTGATTGCCGATGAGCCGACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTGTTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.614	98.165	0.428
amiE	Streptococcus thermophilus LMG 18311	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMD-9	43.302	98.165	0.425
oppD	Streptococcus mutans UA159	41.693	97.554	0.407