Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JZX97_RS06650 Genome accession   NZ_CP071155
Coordinates   1328694..1330385 (+) Length   563 a.a.
NCBI ID   WP_003766795.1    Uniprot ID   A0AB73H4H6
Organism   Listeria innocua strain LI42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1323694..1335385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX97_RS06625 - 1323844..1324725 (+) 882 WP_003771729.1 polyprenyl synthetase family protein -
  JZX97_RS06630 - 1324924..1325124 (+) 201 WP_003719639.1 cold-shock protein -
  JZX97_RS06635 dxs 1325290..1327210 (+) 1921 Protein_1308 1-deoxy-D-xylulose-5-phosphate synthase -
  JZX97_RS06640 - 1327207..1328031 (+) 825 WP_003771733.1 TlyA family RNA methyltransferase -
  JZX97_RS06645 ahrC 1328222..1328671 (+) 450 WP_003766793.1 transcriptional regulator AhrC/ArgR -
  JZX97_RS06650 recN 1328694..1330385 (+) 1692 WP_003766795.1 DNA repair protein RecN Machinery gene
  JZX97_RS06655 - 1330515..1331381 (+) 867 WP_194319846.1 phosphate acyltransferase -
  JZX97_RS06660 buk 1331518..1332585 (+) 1068 WP_003771739.1 butyrate kinase -
  JZX97_RS06665 lpdA 1332599..1334026 (+) 1428 WP_033533055.1 dihydrolipoyl dehydrogenase -
  JZX97_RS06670 - 1334051..1335046 (+) 996 WP_194319845.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63582.35 Da        Isoelectric Point: 5.2644

>NTDB_id=543348 JZX97_RS06650 WP_003766795.1 1328694..1330385(+) (recN) [Listeria innocua strain LI42]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=543348 JZX97_RS06650 WP_003766795.1 1328694..1330385(+) (recN) [Listeria innocua strain LI42]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGCTTATTTGCCCTAGCAGAAGATAATCTTGCCTGCCGTAATGCA
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAACTAGTAACTACGGTGTTGCTACGTCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AACACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCTGATAAAATTAAACCCGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCAAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGCCAGATGGAAGCGGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAAGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGTGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATTAGCC
GTATGATTGCTGGGATAGAAGTGACTGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531