Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZX97_RS01020 Genome accession   NZ_CP071155
Coordinates   227087..228460 (+) Length   457 a.a.
NCBI ID   WP_003760072.1    Uniprot ID   Q92F42
Organism   Listeria innocua strain LI42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222087..233460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX97_RS01000 - 222433..222891 (+) 459 WP_211088639.1 CtsR family transcriptional regulator -
  JZX97_RS01005 - 222904..223422 (+) 519 WP_003760064.1 UvrB/UvrC motif-containing protein -
  JZX97_RS01010 - 223419..224441 (+) 1023 WP_010990301.1 protein arginine kinase -
  JZX97_RS01015 - 224470..226932 (+) 2463 WP_194320114.1 ATP-dependent Clp protease ATP-binding subunit -
  JZX97_RS01020 radA 227087..228460 (+) 1374 WP_003760072.1 DNA repair protein RadA Machinery gene
  JZX97_RS01025 - 228594..229667 (+) 1074 WP_003770118.1 PIN/TRAM domain-containing protein -
  JZX97_RS01030 ispD 229687..230385 (+) 699 WP_033533523.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JZX97_RS01035 ispF 230378..230851 (+) 474 WP_003770122.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JZX97_RS01040 gltX 230870..232345 (+) 1476 WP_194320113.1 glutamate--tRNA ligase -
  JZX97_RS01045 epsC 232744..233358 (+) 615 WP_194320112.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=543339 JZX97_RS01020 WP_003760072.1 227087..228460(+) (radA) [Listeria innocua strain LI42]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=543339 JZX97_RS01020 WP_003760072.1 227087..228460(+) (radA) [Listeria innocua strain LI42]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTGCTTGTTGGCGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTTCAAGTGTCGGCACAACTTACCCTTACTAATAAGAAAGTATTATATATCTCTGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTACAAGTTTCCGGTGATAATTTGTACGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACTGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACTGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAGATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGG
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q92F42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643