Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SCAZ3_RS04750 Genome accession   NZ_AIDX01000001
Coordinates   1005408..1006172 (+) Length   254 a.a.
NCBI ID   WP_003045876.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000408..1011172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS04730 (SCAZ3_00125) mreC 1001351..1002169 (+) 819 WP_003045871.1 rod shape-determining protein MreC -
  SCAZ3_RS04735 (SCAZ3_00130) mreD 1002169..1002669 (+) 501 WP_003045872.1 rod shape-determining protein MreD -
  SCAZ3_RS04740 (SCAZ3_00135) pcsB 1002765..1003994 (+) 1230 WP_003045873.1 peptidoglycan hydrolase PcsB -
  SCAZ3_RS04745 (SCAZ3_00140) - 1004228..1005190 (+) 963 WP_003045875.1 ribose-phosphate diphosphokinase -
  SCAZ3_RS04750 (SCAZ3_00145) recO 1005408..1006172 (+) 765 WP_003045876.1 DNA repair protein RecO Machinery gene
  SCAZ3_RS04755 (SCAZ3_00150) plsX 1006282..1007289 (+) 1008 WP_003045878.1 phosphate acyltransferase PlsX -
  SCAZ3_RS04760 (SCAZ3_00155) - 1007282..1007524 (+) 243 WP_003045880.1 phosphopantetheine-binding protein -
  SCAZ3_RS04765 (SCAZ3_00160) - 1007732..1007920 (+) 189 WP_003045882.1 hypothetical protein -
  SCAZ3_RS04770 (SCAZ3_00165) - 1007959..1008453 (+) 495 WP_003045884.1 hypothetical protein -
  SCAZ3_RS04775 (SCAZ3_00175) - 1008554..1008742 (+) 189 WP_003045888.1 hypothetical protein -
  SCAZ3_RS04780 (SCAZ3_00180) - 1008729..1010222 (+) 1494 WP_003045889.1 primase C-terminal domain-containing protein -
  SCAZ3_RS11985 (SCAZ3_00185) - 1010336..1010509 (+) 174 WP_003045891.1 hypothetical protein -
  SCAZ3_RS04785 (SCAZ3_00190) - 1010510..1010713 (+) 204 WP_003045893.1 hypothetical protein -
  SCAZ3_RS04790 (SCAZ3_00195) - 1010739..1011149 (+) 411 WP_003045896.1 hypothetical protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30014.27 Da        Isoelectric Point: 5.9884

>NTDB_id=54330 SCAZ3_RS04750 WP_003045876.1 1005408..1006172(+) (recO) [Streptococcus canis FSL Z3-227]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLASVVQPLTVADFIFKLNESGLSYINDYNQVDTYRY
INEDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEILTNIFEVQVLERFGISINFHDCAFCHRVGL
PFDFSHQYSGVLCPEHYHKDERRNHLDPNVIYLLDRFQTIQFEELRTISLKDDMKRKLRHFIDELYHDYVGLQLKSKIFI
DDLSKWGNIMKQKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=54330 SCAZ3_RS04750 WP_003045876.1 1005408..1006172(+) (recO) [Streptococcus canis FSL Z3-227]
ATGCAGTTAAACGAGTCTTTGGGGATTGTCCTTTTTAATAGGAATTATCGGGAAGATGATAAATTGGTCAAGATTTTTAC
GGAGACGGCTGGGAAACGCATGTTTTTCGTAAAACATATTAGTCGTTCTAAACTTGCTTCGGTGGTTCAGCCCTTGACTG
TTGCTGACTTTATCTTTAAGTTAAATGAGTCAGGTCTTTCCTACATTAATGATTATAATCAGGTGGATACTTATCGGTAC
ATTAATGAAGATCTCTTTCGACTATCTTATGCAAGCTATGTGGTGGCTTTGGCAGATGCTGCTATTTCGGACAATGAACC
TGATCCTCATTTATTTGCTTTTTTGAAAAAGACCCTTGATTTGATGGAAGAGGGGTTAGATTATGAGATTTTAACCAATA
TTTTTGAAGTTCAAGTGTTAGAACGGTTTGGAATTAGCATTAATTTTCATGACTGTGCTTTTTGTCATCGTGTGGGTCTG
CCATTTGATTTTTCACATCAGTATTCAGGAGTGCTTTGTCCAGAACATTATCATAAAGATGAACGTCGTAATCATCTAGA
TCCCAATGTGATTTATTTGTTAGATCGTTTTCAAACCATTCAGTTTGAGGAGTTAAGGACCATTTCTTTGAAGGATGATA
TGAAAAGAAAGCTTCGTCATTTTATTGATGAATTGTATCACGATTATGTAGGGCTTCAGTTGAAAAGCAAGATCTTTATT
GACGATTTGAGTAAATGGGGTAACATTATGAAACAAAAGGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.306

97.638

0.618

Multiple sequence alignment