Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LN355_RS10005 Genome accession   NZ_CP086618
Coordinates   2090201..2091625 (-) Length   474 a.a.
NCBI ID   WP_000148130.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C039227     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085201..2096625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN355_RS09975 (LN355_09980) yeeZ 2085256..2086080 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LN355_RS09980 (LN355_09985) yeeY 2086126..2087055 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  LN355_RS09985 (LN355_09990) yoeI 2087270..2087332 (+) 63 WP_010723108.1 membrane protein YoeI -
  LN355_RS09990 (LN355_09995) plaP 2087322..2088680 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LN355_RS09995 (LN355_10000) tsuA 2088859..2089917 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  LN355_RS10000 (LN355_10005) tsuB 2089931..2090158 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LN355_RS10005 (LN355_10010) sbcB 2090201..2091625 (-) 1425 WP_000148130.1 exodeoxyribonuclease I Machinery gene
  LN355_RS10010 (LN355_10015) - 2091807..2092985 (+) 1179 WP_001007952.1 tyrosine-type recombinase/integrase -
  LN355_RS10015 (LN355_10020) - 2092966..2093157 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  LN355_RS10020 (LN355_10025) yfdT 2093246..2093551 (-) 306 WP_000627693.1 protein YfdT -
  LN355_RS10025 (LN355_10030) - 2093551..2093913 (-) 363 WP_001242744.1 hypothetical protein -
  LN355_RS10030 (LN355_10035) yfdR 2093904..2094440 (-) 537 WP_000008235.1 5'-deoxynucleotidase -
  LN355_RS10035 (LN355_10040) - 2094522..2094841 (-) 320 Protein_1976 hypothetical protein -
  LN355_RS10040 (LN355_10045) - 2094954..2095241 (+) 288 WP_000141754.1 hypothetical protein -
  LN355_RS10045 (LN355_10050) - 2095154..2095462 (+) 309 Protein_1978 phage tail protein -
  LN355_RS10050 (LN355_10055) - 2095462..2096055 (+) 594 WP_000805577.1 tail fiber assembly protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54323.60 Da        Isoelectric Point: 5.6054

>NTDB_id=543229 LN355_RS10005 WP_000148130.1 2090201..2091625(-) (sbcB) [Escherichia coli strain RIVM_C039227]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=543229 LN355_RS10005 WP_000148130.1 2090201..2091625(-) (sbcB) [Escherichia coli strain RIVM_C039227]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584