Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SCAZ3_RS03535 Genome accession   NZ_AIDX01000001
Coordinates   768638..770347 (-) Length   569 a.a.
NCBI ID   WP_003045509.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 763638..775347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS03515 (SCAZ3_10540) radA 763958..765320 (-) 1363 Protein_702 DNA repair protein RadA -
  SCAZ3_RS03520 (SCAZ3_10545) - 765418..765864 (-) 447 WP_003045504.1 dUTP diphosphatase -
  SCAZ3_RS03525 (SCAZ3_10550) - 765970..766737 (-) 768 WP_003045505.1 epoxyqueuosine reductase QueH -
  SCAZ3_RS03530 (SCAZ3_10555) - 766854..768638 (-) 1785 WP_003045507.1 ABC transporter ATP-binding protein -
  SCAZ3_RS03535 (SCAZ3_10560) rcrP 768638..770347 (-) 1710 WP_003045509.1 ABC transporter ATP-binding protein Regulator
  SCAZ3_RS03540 (SCAZ3_10565) rcrR 770340..770789 (-) 450 WP_003045511.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SCAZ3_RS03545 (SCAZ3_10570) - 771089..772105 (+) 1017 WP_003045513.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SCAZ3_RS03550 (SCAZ3_10575) galU 772137..773042 (+) 906 WP_003045515.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SCAZ3_RS03555 (SCAZ3_10580) - 773305..773976 (-) 672 WP_003045516.1 rhomboid family intramembrane serine protease -
  SCAZ3_RS03560 (SCAZ3_10585) - 773973..774500 (-) 528 WP_039994714.1 5-formyltetrahydrofolate cyclo-ligase -
  SCAZ3_RS12545 - 775006..775155 (-) 150 WP_081587247.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63113.75 Da        Isoelectric Point: 5.8795

>NTDB_id=54319 SCAZ3_RS03535 WP_003045509.1 768638..770347(-) (rcrP) [Streptococcus canis FSL Z3-227]
MLKEAILRYKWYVLGSLLMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYDVGRLLLIIALVGLVSGTLNTVLSAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDITQIQNLVMMLFQVLLRLPILFMGSFIMAVQTLPDLWWVIVLMV
ILIGIIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKEASKELLDLNLFIGYGFSLMQPTL
MLVSYLAVYVSIYMVSGMVETDPAVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRIKEVLNTEPAMTFETDQE
EEVSGSIVFEDVSFTYPNDDEPTLHHISFSIEPGQMIGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPITSLSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDYAMERAARIAQAMEFIDRMDGRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSEKLVQEALNKELKGTTTVIIAQKISSVVKADKILVLDQGQLLGEGTHAELLANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=54319 SCAZ3_RS03535 WP_003045509.1 768638..770347(-) (rcrP) [Streptococcus canis FSL Z3-227]
ATGCTTAAAGAGGCAATCCTGCGTTACAAATGGTACGTTTTAGGCTCGCTACTGATGATTATTGGGGTGGTTGCGAGTAG
TCTGTTACAACCTCATTATTTAAAAGATGTGTTAAGTGCCGTTATTCAAAATAACCAAGATAAGATTTATGATGTGGGGA
GGTTGTTGCTTATCATTGCCCTTGTGGGCTTGGTTTCTGGAACCCTTAATACGGTTTTATCAGCTAAGATTGCTCAAGGG
GTTTCAGCTGATATTCGTGAGAAGACTTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTCGAGGCATTTAATGCTGG
GAATCTTGTCGTTCGGATGACCAATGATATTACTCAAATTCAAAATTTGGTGATGATGCTGTTTCAGGTTCTCCTTCGAT
TGCCAATTCTCTTTATGGGCTCTTTTATTATGGCAGTGCAGACCTTACCTGACTTGTGGTGGGTCATTGTGCTGATGGTC
ATTTTAATTGGGATAATCATGGCTTTGGTCATGAGTCAGATGGGACCACGTTTTGGGAAATTCCAAAAATTGATGGACAA
GATTAATCGTATTGCCAAGGAAAACCTTCGCGGGGTGCGTGTGGTTAAATCCTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAGCTTCTAAAGAACTATTGGACTTGAATCTTTTTATCGGCTATGGCTTTTCGTTGATGCAACCAACTTTG
ATGTTAGTATCTTATTTGGCAGTTTATGTATCCATCTACATGGTTTCTGGCATGGTTGAAACAGACCCAGCAGTTATTGG
AAATATTGCTTCCTTTATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTTGGCTTTATGGGTATGCAAGCCA
GTCGTGCCTTTGTTTCTATTGGTCGTATCAAAGAAGTGCTCAATACTGAGCCAGCCATGACCTTTGAAACTGATCAAGAA
GAAGAGGTTTCAGGTAGTATTGTGTTTGAGGATGTGAGCTTTACCTATCCTAATGATGATGAACCGACCTTGCACCATAT
TTCCTTTAGCATTGAACCTGGTCAAATGATTGGCGTTGTGGGGGCTACTGGGGCTGGAAAGTCAACACTGGCACAGCTTA
TTCCTCGCTTGTTTGACCCACAAGAAGGTCAAATTTTGCTGGGAGGCAAACCGATTACATCTCTTAGTCAAGCGACTCTT
CGTCAGACGGTTTCGATTGTGTTGCAAAAGGCTATTCTCTTTTCAGGAACTATTGCGGACAACCTTCGCCAGGGGTCAGC
GACTGCAGATGATTATGCCATGGAACGGGCAGCACGTATTGCGCAGGCCATGGAATTTATTGACCGCATGGATGGTCGCT
ATGAGAGCCAAGTTGAAGAACGAGGCAACAACTTTTCTGGTGGGCAAAAACAACGGATGTCGATTGCGCGTGGTGTCATT
AACCAGCCTAAGATTCTTGTTTTAGACGATTCAACGTCTGCCTTGGATGCCAAGTCAGAAAAATTGGTACAAGAAGCCTT
AAACAAGGAATTGAAAGGCACAACGACCGTTATTATTGCCCAAAAGATTTCTTCAGTGGTGAAGGCTGATAAGATTTTAG
TTCTTGATCAGGGTCAGCTGCTTGGCGAAGGAACTCATGCTGAATTGTTAGCCAATAATGCGGTTTATCGTGAAATTTAT
GACACACAAAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-282)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.245

100

0.367

Multiple sequence alignment