Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZL65_RS13565 Genome accession   NZ_CP071137
Coordinates   2704818..2706182 (+) Length   454 a.a.
NCBI ID   WP_273144736.1    Uniprot ID   A0A9E6SXI6
Organism   MAG: Ferrovum myxofaciens isolate MI1III     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2699818..2711182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZL65_RS13535 (JZL65_13560) rlmB 2701143..2701901 (+) 759 WP_031595079.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JZL65_RS13540 (JZL65_13565) rpsF 2702010..2702387 (+) 378 WP_035416863.1 30S ribosomal protein S6 -
  JZL65_RS13545 (JZL65_13570) priB 2702384..2702707 (+) 324 WP_051861737.1 primosomal replication protein N -
  JZL65_RS13550 (JZL65_13575) rpsR 2702694..2702966 (+) 273 WP_031595076.1 30S ribosomal protein S18 -
  JZL65_RS13555 (JZL65_13580) rplI 2702981..2703427 (+) 447 WP_031595075.1 50S ribosomal protein L9 -
  JZL65_RS13560 (JZL65_13585) dnaB 2703437..2704807 (+) 1371 WP_031595073.1 replicative DNA helicase -
  JZL65_RS13565 (JZL65_13590) radA 2704818..2706182 (+) 1365 WP_273144736.1 DNA repair protein RadA Machinery gene
  JZL65_RS13570 (JZL65_13595) - 2706158..2706901 (-) 744 WP_273144739.1 SDR family NAD(P)-dependent oxidoreductase -
  JZL65_RS13575 (JZL65_13600) - 2707080..2707271 (+) 192 WP_051861743.1 hypothetical protein -
  JZL65_RS13580 (JZL65_13605) hyfB 2707276..2709297 (+) 2022 WP_031595067.1 hydrogenase 4 subunit B -
  JZL65_RS13585 (JZL65_13610) - 2709294..2710241 (+) 948 WP_031595066.1 respiratory chain complex I subunit 1 family protein -
  JZL65_RS13590 (JZL65_13615) - 2710244..2710918 (+) 675 WP_031595063.1 formate hydrogenlyase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48457.67 Da        Isoelectric Point: 7.9400

>NTDB_id=542982 JZL65_RS13565 WP_273144736.1 2704818..2706182(+) (radA) [MAG: Ferrovum myxofaciens isolate MI1III]
MARAKSVFVCRECGGESPRWQGQCPHCQAWNTLAEFRTGEGKGSAQRSSLTSPSLVQPLHQVKAESLQRLSSGLPEFDRV
LGGGFVPGGVVLLGGDPGIGKSTLLLQSLAQVGKQHGVLYVTGEESPEQVAERARRLQLSGAAVDLLAETRLQAVEAVIR
ERQPQLVVIDSIQTLYSDALEAAPGSVSQVRDCAAQLTRLAKSGGPVMILVGHVTKEGTLAGPRILEHMVDTVLYFEGDG
SSSYRLIRAIKNRFGAVNELGVFGMTETGLREVSNPSALFMSRHAQPVSGSCATVTLEGTRPLAVEIQALLDESRMGIPR
RLTVGLEQNRLALLLAVLHRHAGVSCGDQDVFVNAVAGVRIGEPAADLAILLAIVSSLRNRPLPPGWVVFGEVGLAGEVR
PVQRGLERLREAAKLGFAVALIPRANAPRQIPDGIRLITVERVEEAVQAFRDGS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=542982 JZL65_RS13565 WP_273144736.1 2704818..2706182(+) (radA) [MAG: Ferrovum myxofaciens isolate MI1III]
ATGGCCCGCGCCAAAAGTGTCTTCGTCTGTCGGGAATGCGGCGGGGAATCTCCGCGCTGGCAGGGCCAATGCCCCCATTG
TCAGGCATGGAATACCCTGGCCGAATTTCGGACCGGGGAAGGGAAAGGGAGTGCTCAACGCTCTTCCCTGACCTCGCCCT
CCTTGGTTCAGCCCCTCCATCAAGTCAAGGCCGAATCCTTGCAGCGCTTGTCCTCTGGGCTGCCGGAATTCGATCGGGTT
CTGGGCGGGGGATTCGTGCCGGGAGGGGTGGTATTGCTGGGCGGGGATCCGGGGATCGGCAAATCCACCCTTTTGTTGCA
ATCCCTGGCTCAGGTAGGAAAACAGCACGGTGTCCTGTATGTGACAGGGGAAGAATCCCCAGAGCAGGTGGCAGAGCGGG
CGCGTCGTCTGCAACTGTCGGGGGCTGCGGTGGATCTGTTGGCCGAAACGCGCTTGCAGGCAGTGGAAGCGGTGATTCGG
GAGCGCCAGCCGCAACTGGTGGTCATCGACTCCATACAAACCCTGTACAGCGATGCGCTGGAAGCTGCGCCGGGCTCGGT
ATCCCAGGTGCGTGACTGTGCGGCCCAACTGACGCGCCTGGCCAAGAGTGGCGGTCCGGTGATGATCCTGGTGGGGCATG
TCACCAAGGAGGGCACCTTGGCTGGTCCGCGTATCCTCGAGCATATGGTGGACACAGTGCTGTATTTCGAGGGGGATGGC
AGTTCCAGTTATCGTTTGATTCGCGCGATCAAGAACCGTTTTGGGGCGGTGAATGAATTGGGTGTCTTTGGGATGACCGA
GACGGGTTTGCGCGAAGTCAGCAATCCTTCCGCCTTGTTCATGTCCCGTCATGCACAACCGGTATCTGGTTCTTGCGCCA
CGGTGACCCTGGAAGGCACCCGCCCTCTGGCGGTGGAGATTCAGGCGCTGCTGGATGAGAGTCGGATGGGTATTCCGCGT
CGGCTCACGGTGGGACTGGAGCAAAATCGTCTGGCCCTGCTCCTGGCGGTGCTACATCGTCATGCTGGGGTGTCCTGTGG
GGACCAGGATGTCTTCGTCAATGCCGTGGCTGGGGTGAGGATTGGCGAACCTGCTGCGGATCTGGCCATCCTGTTGGCCA
TTGTCTCCAGTTTGCGCAATCGTCCCCTGCCGCCTGGTTGGGTGGTGTTTGGTGAAGTAGGGTTGGCGGGGGAGGTACGC
CCCGTTCAGCGTGGTCTGGAGCGCTTGCGCGAAGCTGCAAAGTTGGGTTTTGCGGTGGCTCTGATACCCCGTGCCAATGC
CCCTCGGCAGATACCCGACGGGATTCGTCTCATTACAGTGGAACGGGTCGAAGAAGCGGTTCAGGCTTTTCGGGATGGGT
CGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.482
  radA Streptococcus mitis SK321

45.556

99.119

0.452
  radA Streptococcus mitis NCTC 12261

45.333

99.119

0.449
  radA Streptococcus pneumoniae TIGR4

45.212

98.899

0.447
  radA Streptococcus pneumoniae R6

45.212

98.899

0.447
  radA Streptococcus pneumoniae Rx1

45.212

98.899

0.447
  radA Streptococcus pneumoniae D39

45.212

98.899

0.447