Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JZL65_RS08885 Genome accession   NZ_CP071137
Coordinates   1785947..1787362 (-) Length   471 a.a.
NCBI ID   WP_273143777.1    Uniprot ID   A0A9E6MUN6
Organism   MAG: Ferrovum myxofaciens isolate MI1III     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780947..1792362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZL65_RS08865 (JZL65_08890) rapZ 1783263..1784171 (-) 909 WP_051862107.1 RNase adapter RapZ -
  JZL65_RS08870 (JZL65_08895) hprK 1784161..1785126 (-) 966 WP_031596532.1 HPr(Ser) kinase/phosphatase -
  JZL65_RS08875 (JZL65_08900) - 1785113..1785586 (-) 474 WP_031596534.1 PTS sugar transporter subunit IIA -
  JZL65_RS08880 (JZL65_08905) hpf 1785593..1785919 (-) 327 WP_031596536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JZL65_RS08885 (JZL65_08910) rpoN/rpoN1 1785947..1787362 (-) 1416 WP_273143777.1 RNA polymerase factor sigma-54 Machinery gene
  JZL65_RS08890 (JZL65_08915) lptB 1787366..1788088 (-) 723 WP_031596538.1 LPS export ABC transporter ATP-binding protein -
  JZL65_RS08895 (JZL65_08920) lptA 1788085..1788717 (-) 633 WP_084189926.1 lipopolysaccharide transport periplasmic protein LptA -
  JZL65_RS08900 (JZL65_08925) lptC 1788677..1789264 (-) 588 WP_031596542.1 LPS export ABC transporter periplasmic protein LptC -
  JZL65_RS08905 (JZL65_08930) - 1789252..1789788 (-) 537 WP_062187308.1 KdsC family phosphatase -
  JZL65_RS08910 (JZL65_08935) - 1789798..1790799 (-) 1002 WP_031596547.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53266.55 Da        Isoelectric Point: 5.0053

>NTDB_id=542975 JZL65_RS08885 WP_273143777.1 1785947..1787362(-) (rpoN/rpoN1) [MAG: Ferrovum myxofaciens isolate MI1III]
MKVQLQLKQTTQLSLTPQLQQSIRLLQLSTQELEQEVEEFLRLNPLLERADGKDGAVDSEPGAFETADHIETAEPTSSAE
IEQESWNFEEGSGIGLGGQGEDEDEGIQDLRVIPLSLRDHLLGQVRLMPLEERDQELVATLIDYLDEDGYLRHSFIDLNS
SVSDALGEVEESEWLVALRILQSLDPAGIGARTLSECLELQLLASHATEEDKRLGKKLLDHLEWLAQREYTRLRRALGIE
ERKVRELQQMLLHFDPRPGAAFSTAETRYVVPDVIVRRTERGWSVSLNEGVMPRLRVNQVYANILKKGVPGHSMSQQLQE
ARWLIKNIQQRFDTILRVACAVVERQKDFLERGEVGMKPLVLREIAEVLGLHESTISRVTVQKYLLTPRGLFELKYFFSS
HVGTDSGEAASSTAVRALIRQLINQEDIKSPLSDQRIANLLGERGFQVARRTVAKYREAMHLPAASLRKSL

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=542975 JZL65_RS08885 WP_273143777.1 1785947..1787362(-) (rpoN/rpoN1) [MAG: Ferrovum myxofaciens isolate MI1III]
ATGAAGGTCCAGCTCCAACTCAAGCAAACGACGCAACTCTCCCTGACGCCGCAGTTGCAGCAATCGATTCGATTGTTGCA
ACTCTCTACCCAGGAGTTGGAACAGGAAGTCGAAGAATTTCTCCGGCTCAATCCTCTGCTGGAACGTGCCGACGGGAAAG
ATGGTGCCGTTGATTCAGAGCCCGGCGCGTTTGAAACTGCAGACCACATTGAAACAGCAGAACCCACCTCTTCTGCCGAA
ATCGAGCAGGAATCCTGGAATTTCGAAGAAGGAAGCGGCATCGGATTGGGGGGGCAGGGCGAAGATGAGGATGAGGGGAT
ACAGGATCTGCGTGTAATTCCACTGTCCCTGCGCGATCATCTTCTGGGGCAGGTACGTCTGATGCCCCTCGAGGAACGGG
ATCAGGAACTGGTGGCCACACTGATCGATTACCTGGATGAAGACGGTTACCTGCGCCATTCCTTCATTGATCTGAATTCC
AGTGTATCCGATGCGCTCGGAGAGGTAGAAGAATCAGAGTGGCTGGTGGCCCTGCGCATTCTGCAATCCCTGGATCCCGC
GGGGATTGGGGCGCGTACCTTGAGCGAGTGCCTGGAACTGCAATTGTTGGCCAGCCATGCGACCGAGGAGGATAAACGAC
TGGGCAAAAAATTGCTCGATCACCTTGAATGGCTGGCACAACGGGAATACACTCGTCTGAGGAGAGCTTTGGGCATCGAG
GAACGCAAGGTCAGGGAATTGCAGCAGATGTTGTTGCACTTCGATCCTCGTCCGGGGGCGGCGTTCAGTACAGCCGAAAC
CCGTTATGTCGTGCCCGATGTGATTGTAAGACGGACGGAGCGGGGTTGGAGTGTATCGCTGAATGAGGGAGTAATGCCAC
GTCTGCGCGTCAATCAGGTCTATGCCAACATTCTCAAGAAAGGGGTTCCGGGTCACTCCATGTCCCAACAACTTCAGGAA
GCACGTTGGTTGATCAAGAATATCCAGCAACGTTTTGACACGATTTTACGGGTGGCCTGTGCTGTAGTCGAGCGACAAAA
AGATTTTCTGGAGCGGGGTGAGGTCGGGATGAAACCTCTGGTTTTGCGCGAAATTGCTGAAGTGTTGGGACTCCATGAAT
CCACTATTTCGCGCGTGACTGTCCAGAAGTATCTGTTGACTCCGCGCGGTTTATTCGAATTAAAATATTTCTTCAGCAGC
CATGTGGGGACGGACAGTGGCGAAGCGGCTTCCTCCACCGCTGTTCGTGCCCTGATCCGTCAATTGATCAATCAGGAAGA
TATTAAAAGTCCTCTGTCCGACCAGCGTATTGCGAATTTGCTGGGCGAGCGGGGGTTCCAGGTGGCAAGGCGGACCGTGG
CCAAGTATCGTGAGGCCATGCATCTTCCTGCCGCCAGTTTGCGCAAGTCGTTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(314-469)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(115-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.479

100

0.554