Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYK05_RS05330 Genome accession   NZ_CP071129
Coordinates   1149727..1151115 (+) Length   462 a.a.
NCBI ID   WP_206468017.1    Uniprot ID   -
Organism   Caballeronia sp. M1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144727..1156115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYK05_RS05310 (JYK05_05310) thiE 1145475..1146119 (-) 645 WP_206468221.1 thiamine phosphate synthase -
  JYK05_RS05315 (JYK05_05315) thiM 1146122..1146937 (-) 816 WP_206468014.1 hydroxyethylthiazole kinase -
  JYK05_RS05320 (JYK05_05320) lplT 1147002..1148309 (-) 1308 WP_206468015.1 lysophospholipid transporter LplT -
  JYK05_RS05325 (JYK05_05325) alr 1148612..1149682 (+) 1071 WP_206468016.1 alanine racemase -
  JYK05_RS05330 (JYK05_05330) radA 1149727..1151115 (+) 1389 WP_206468017.1 DNA repair protein RadA Machinery gene
  JYK05_RS05335 (JYK05_05335) - 1151274..1151537 (+) 264 WP_241269851.1 DUF2866 domain-containing protein -
  JYK05_RS05340 (JYK05_05340) - 1151540..1152565 (-) 1026 WP_206468018.1 CaiB/BaiF CoA-transferase family protein -
  JYK05_RS05345 (JYK05_05345) - 1152587..1154533 (-) 1947 WP_206468019.1 ATP-binding cassette domain-containing protein -
  JYK05_RS05350 (JYK05_05350) - 1154688..1155179 (+) 492 WP_206468020.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48656.99 Da        Isoelectric Point: 6.9499

>NTDB_id=542960 JYK05_RS05330 WP_206468017.1 1149727..1151115(+) (radA) [Caballeronia sp. M1242]
MAKAAKAKTLYICSECGGQAPKWTGQCAACGAWNTLVESVEQAPSAHRFQALAKSSPVQRLADIEAADVPRFSTGVGEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIARERPSLYVSGEESGAQIALRAQRLGLLGGSASAAADLALLAEIQL
EKIQAAIDEQRPEVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQTGTAIIMVGHVTKEGSLAGPRVLEHIVDT
VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVAGSCVLVTQEGSRPLLVEVQALVD
TAHVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLITFGE
VGLAGEIRPSPRGQDRLKEAAKLGFSVALIPKANAPKQAVDGLKVIAVDRIEEAIDRVRDVE

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=542960 JYK05_RS05330 WP_206468017.1 1149727..1151115(+) (radA) [Caballeronia sp. M1242]
GTGGCAAAAGCAGCGAAGGCAAAGACGCTTTACATCTGTAGCGAGTGCGGCGGACAAGCGCCGAAGTGGACCGGACAGTG
CGCGGCCTGCGGGGCGTGGAACACGCTCGTGGAATCGGTGGAGCAGGCGCCGTCGGCGCATCGCTTCCAGGCGCTCGCGA
AGAGTTCGCCGGTGCAGCGGCTCGCCGACATCGAAGCGGCGGACGTGCCGCGCTTTTCGACCGGCGTCGGCGAGTTCGAC
CGCGTGCTCGGCGGCGGTCTCGTGCCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCGACGCTTCT
GCTGCAATCGCTCGCGGAAATCGCGCGCGAACGGCCGTCGCTCTATGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGT
TGCGCGCGCAACGGCTTGGGCTGCTCGGCGGATCCGCGAGTGCGGCGGCGGACCTCGCGCTGCTCGCCGAAATTCAGCTC
GAAAAGATTCAGGCGGCCATCGACGAGCAACGTCCGGAAGTCGCCGTCATCGATTCGATTCAGACCATCTATTCCGAGGC
GCTGACCTCCGCGCCGGGTTCCGTGGCGCAAGTCCGCGAATGCGCGGCGCAACTGACGCGCATCGCCAAGCAGACGGGCA
CGGCCATCATCATGGTCGGCCACGTGACCAAGGAAGGCAGTCTCGCGGGTCCGCGCGTGCTGGAGCATATCGTCGATACG
GTGCTGTACTTCGAGGGCGACACGCACTCGTCCTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAATGA
GCTCGGCGTCTTCGCGATGACGGAGAAAGGCTTGCGCGGCGTGGCGAATCCGTCGGCGCTTTTCTTGTCGCAGCATGAGC
AGAGCGTCGCGGGGTCGTGTGTGCTCGTCACGCAGGAAGGTTCGCGGCCGCTGCTCGTCGAAGTGCAGGCGCTCGTCGAT
ACGGCGCATGTGCCGAATCCGCGCCGCCTCGCGGTCGGGCTGGAGCAGAACCGGCTCGCGCTGCTGCTTGCCGTGCTGCA
TCGGCATGCGGGCATCGCGTGTTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATTACCGAACCCGCCG
CCGATCTCGCGGTACTGCTCGCGATTCACTCGTCGATGCGCAACAAGCCGCTGCCGAAGGGCTTGATCACGTTCGGCGAA
GTAGGGCTGGCGGGCGAAATCCGGCCGTCGCCGCGCGGGCAGGATCGCCTGAAGGAAGCGGCCAAGCTCGGCTTTTCCGT
CGCGCTGATTCCGAAGGCCAATGCGCCGAAGCAGGCGGTGGACGGTCTGAAAGTGATCGCGGTCGATCGCATCGAAGAAG
CCATCGACCGCGTGCGCGATGTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.862

100

0.511
  radA Streptococcus pneumoniae Rx1

47.289

99.784

0.472
  radA Streptococcus pneumoniae D39

47.289

99.784

0.472
  radA Streptococcus pneumoniae TIGR4

47.289

99.784

0.472
  radA Streptococcus pneumoniae R6

47.289

99.784

0.472
  radA Streptococcus mitis SK321

47.186

100

0.472
  radA Streptococcus mitis NCTC 12261

47.072

99.784

0.47