Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JYK05_RS01180 Genome accession   NZ_CP071129
Coordinates   240282..241799 (-) Length   505 a.a.
NCBI ID   WP_206467447.1    Uniprot ID   -
Organism   Caballeronia sp. M1242     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 235282..246799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYK05_RS01155 (JYK05_01155) - 236085..236726 (-) 642 WP_206467445.1 LON peptidase substrate-binding domain-containing protein -
  JYK05_RS01160 (JYK05_01160) rapZ 236761..237657 (-) 897 WP_206467446.1 RNase adapter RapZ -
  JYK05_RS01165 (JYK05_01165) hprK 237737..238705 (-) 969 WP_008351692.1 HPr(Ser) kinase/phosphatase -
  JYK05_RS01170 (JYK05_01170) ptsN 238899..239390 (-) 492 WP_371826391.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JYK05_RS01175 (JYK05_01175) hpf 239740..240099 (-) 360 WP_175939330.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JYK05_RS01180 (JYK05_01180) rpoN/rpoN1 240282..241799 (-) 1518 WP_206467447.1 RNA polymerase factor sigma-54 Machinery gene
  JYK05_RS01185 (JYK05_01185) lptB 241972..242739 (-) 768 WP_206467448.1 LPS export ABC transporter ATP-binding protein -
  JYK05_RS01190 (JYK05_01190) lptA 242751..243377 (-) 627 WP_206468176.1 lipopolysaccharide transport periplasmic protein LptA -
  JYK05_RS01195 (JYK05_01195) lptC 243491..244093 (-) 603 WP_206467449.1 LPS export ABC transporter periplasmic protein LptC -
  JYK05_RS01200 (JYK05_01200) - 244098..244634 (-) 537 WP_206467450.1 HAD family hydrolase -
  JYK05_RS01205 (JYK05_01205) kdsD 244634..245617 (-) 984 WP_175939340.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55427.40 Da        Isoelectric Point: 4.8740

>NTDB_id=542955 JYK05_RS01180 WP_206467447.1 240282..241799(-) (rpoN/rpoN1) [Caballeronia sp. M1242]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDDWIASPLRVAADGSLIATAGASSAAPEPM
MSNGSTSSSSSSERSESSEPQGVDEYNGLSSDGGTDSSNWNLEDYGRSNNASDDDDLPPLQIHESTTTLRDHLTAQLRMT
QANQRDRALITFLIESLDEDGYLTSSLDEIQADLPDELEVDVDELSAALALLQSFDPPGVGGRSASECLKLQLLRLDPSP
TRTLALEIVTNHLELLAARDFTRLRKQLKASDDALRDAHVLIRSLEPFPGAAYGKSEADYVVPDILVRKSASGWTAELNP
EIVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKTPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=542955 JYK05_RS01180 WP_206467447.1 240282..241799(-) (rpoN/rpoN1) [Caballeronia sp. M1242]
ATGAAAGCCAGCCTCCAACTTCGCCTATCGCAGCATCTTGCGCTCACCCCGCAACTACAGCAGTCCATCCGGCTGCTGCA
GTTGTCGACGCTCGAACTGCAGCAGGAAGTGGCAATGGCCGTCGCGCAAAACCCGCTGCTGGAAAACGACGACGACTGGA
TCGCGAGTCCGCTTCGCGTGGCCGCGGACGGTTCGCTGATTGCCACGGCCGGCGCGAGCAGCGCCGCGCCCGAGCCGATG
ATGAGCAACGGCTCCACGTCGAGTTCGTCGAGTTCCGAACGATCGGAAAGCAGCGAGCCGCAGGGCGTCGACGAGTACAA
CGGCCTGTCATCCGACGGCGGCACAGATTCGAGCAACTGGAATCTGGAAGACTACGGCCGCTCGAACAACGCCTCCGACG
ACGACGACCTCCCGCCGCTGCAAATCCACGAATCGACGACGACGCTGCGCGACCATCTCACCGCGCAACTGCGCATGACG
CAGGCGAATCAGCGCGACCGCGCGCTGATCACGTTCCTGATCGAATCGCTGGATGAGGACGGGTATCTCACGTCGTCGCT
CGACGAAATTCAGGCGGATTTGCCGGACGAACTCGAAGTCGATGTCGACGAACTCAGCGCGGCATTGGCCTTGCTCCAGA
GTTTCGATCCGCCGGGTGTCGGCGGCCGGTCGGCGTCGGAGTGTCTGAAGCTGCAATTGCTGCGGCTCGATCCGTCGCCC
ACGCGCACGCTTGCGCTCGAAATCGTCACGAACCATCTGGAACTGCTCGCCGCGCGCGACTTCACGCGCTTGCGCAAGCA
ACTGAAGGCAAGCGACGACGCGCTGCGGGACGCGCACGTGCTGATCCGGTCGCTGGAGCCGTTTCCCGGCGCCGCATACG
GCAAGAGTGAAGCGGACTACGTGGTGCCGGACATTCTGGTGCGCAAGTCCGCCAGCGGATGGACCGCGGAACTGAATCCG
GAGATCGTGCCGCGGCTGCGGATCAACCATCTGTACGCGAACATTTTGCGCAATAACCGTGGCGATCCGGGCAGCGGTTC
ACTGCGTCAACAGCTTCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGTTTCGAGACGATTCTTCGCGTCGCGC
AGGCGATCGTCGAGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATCGCCATGCGGCCCTTGGTTTTGCGGGAGATTGCT
GATACGCTGGGTTTACACGAATCGACGGTTTCCCGTGTGACTACCGGGAAGTACATGCTCACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTTGGATCGCACGTTTCCACCGACACGGGCGGCGCCGCATCGTCCACGGCGATCCGGGCCCTCATCA
AGCAACTGATAGGAGCGGAAGACCCCAAAACTCCTCTTTCAGACAGCCGCATCGCCGAACTGCTGGCGGAACAAGGCTTC
GTGGTTGCGCGGCGCACCGTCGCCAAGTACCGCGAGGCGCTGAAAATCCCCGCAGTCAATCTGCGCAAGTCTCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.391

100

0.675