Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JYK05_RS01070 Genome accession   NZ_CP071129
Coordinates   222561..223790 (-) Length   409 a.a.
NCBI ID   WP_206467435.1    Uniprot ID   -
Organism   Caballeronia sp. M1242     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217561..228790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYK05_RS01050 (JYK05_01050) ybiB 219258..220229 (-) 972 WP_175939288.1 DNA-binding protein YbiB -
  JYK05_RS01055 (JYK05_01055) - 220528..221226 (+) 699 WP_206467434.1 fumarylacetoacetate hydrolase family protein -
  JYK05_RS01060 (JYK05_01060) maiA 221242..221886 (+) 645 WP_175939292.1 maleylacetoacetate isomerase -
  JYK05_RS01065 (JYK05_01065) - 221883..222515 (+) 633 WP_175939293.1 LysE/ArgO family amino acid transporter -
  JYK05_RS01070 (JYK05_01070) pilA 222561..223790 (-) 1230 WP_206467435.1 signal recognition particle-docking protein FtsY Machinery gene
  JYK05_RS01075 (JYK05_01075) rsmD 223998..224633 (+) 636 WP_206467436.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JYK05_RS01080 (JYK05_01080) coaD 224733..225236 (+) 504 WP_175939299.1 pantetheine-phosphate adenylyltransferase -
  JYK05_RS01085 (JYK05_01085) - 225252..225602 (-) 351 WP_175939301.1 winged helix-turn-helix domain-containing protein -
  JYK05_RS01090 (JYK05_01090) - 225695..226264 (+) 570 WP_206467437.1 hypothetical protein -
  JYK05_RS01095 (JYK05_01095) - 226278..226424 (-) 147 WP_175939304.1 hypothetical protein -
  JYK05_RS01100 (JYK05_01100) - 226724..226981 (+) 258 WP_159835144.1 YfhL family 4Fe-4S dicluster ferredoxin -
  JYK05_RS01105 (JYK05_01105) hisC 226985..228055 (-) 1071 WP_175939306.1 histidinol-phosphate transaminase -
  JYK05_RS01110 (JYK05_01110) pth 228076..228678 (-) 603 WP_206467438.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44023.20 Da        Isoelectric Point: 4.5343

>NTDB_id=542954 JYK05_RS01070 WP_206467435.1 222561..223790(-) (pilA) [Caballeronia sp. M1242]
MFSFFKRFKKPADAPLDPSAENTPDAAEDEEASAPVIEAELDREPAVDAAIPSEAPPAVEPEPPAQPAQAAANEEPKPYW
QGRTQSQWLRAPETDEASEEVLPPPEPDAAAKKSWLSRLRNGLSKTSSSLTGIFVGAKIDEDLYEELETALLMSDAGVDA
TEFLLESLREKVRAERLTEATQVKAALRELLVDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAKHLQSFNQSV
LLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVRRVIA
KAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFKA
EEFADALLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=542954 JYK05_RS01070 WP_206467435.1 222561..223790(-) (pilA) [Caballeronia sp. M1242]
ATGTTCAGCTTTTTCAAACGATTCAAAAAGCCGGCTGACGCGCCGCTCGACCCATCCGCCGAGAACACGCCCGACGCCGC
AGAGGACGAAGAAGCGTCCGCTCCCGTGATCGAGGCGGAACTGGACCGCGAGCCCGCCGTCGACGCCGCCATCCCTTCGG
AAGCGCCACCTGCCGTCGAGCCTGAACCGCCCGCGCAGCCCGCTCAAGCTGCCGCAAACGAAGAACCGAAGCCGTACTGG
CAAGGCCGCACGCAGTCGCAATGGCTGCGCGCGCCGGAAACCGACGAGGCGAGCGAAGAAGTGCTGCCGCCGCCCGAGCC
CGACGCCGCCGCGAAGAAGTCGTGGCTGTCGCGCCTGAGGAACGGCCTGTCGAAGACCAGTTCGAGCCTGACGGGCATCT
TCGTCGGCGCGAAGATCGACGAGGACCTGTACGAGGAGCTCGAAACAGCGCTCTTGATGTCCGACGCGGGCGTCGATGCC
ACCGAATTCCTGCTCGAATCGCTGCGCGAAAAGGTGCGCGCCGAGCGGCTGACGGAGGCCACGCAGGTGAAGGCGGCGTT
GCGCGAGCTGCTCGTCGATTTGCTGCGTCCGCTCGAAAAGTCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGATGATGA
TCGCGGGCGTGAACGGCGTCGGCAAGACGACGAGCATCGGCAAGCTGGCGAAGCATCTGCAGAGCTTCAACCAGTCGGTG
CTGCTCGCCGCCGGCGACACGTTTCGCGCCGCCGCCCGCGAACAGCTCACCGTCTGGGGCGAGCGCAACAACGTGACGGT
GATCGCGCAGGAAAGCGGCGACGCGGCCGCCGTCATTTTCGACGCCGTGGGCGCGGCGCGCGCCCGCAAGATCGATGTAA
TGATGGCCGACACCGCTGGCCGTCTGCCGACGCAGCTGCATCTGATGGAAGAGTTGCGCAAGGTGCGCCGCGTGATCGCG
AAGGCGATGCCGGACGCGCCTCACGAAGTGCTGCTCGTCATCGACGCGAACACGGGGCAAAACGCGCTCGCGCAAGTGAA
GGCGTTCGACGATGCGCTCGGTCTGACCGGCCTCATCGTGACGAAGCTCGACGGCACAGCGAAAGGCGGCATTCTCGCCG
CCATCGCGCGACAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTGGAGGACTTGCAGCCGTTCAAGGCG
GAAGAGTTCGCCGACGCGTTGCTGGGGTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(210-409)

SRP54-type protein, helical bundle domain (SRP54_N)

(128-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.518

100

0.535