Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SCAZ3_RS01040 Genome accession   NZ_AIDX01000001
Coordinates   228243..228977 (-) Length   244 a.a.
NCBI ID   WP_003044324.1    Uniprot ID   A0A2D4DPJ6
Organism   Streptococcus canis FSL Z3-227     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 223243..233977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS01015 (SCAZ3_08010) - 224209..225204 (-) 996 WP_003044307.1 ornithine cyclodeaminase -
  SCAZ3_RS01020 (SCAZ3_08015) - 225222..226079 (-) 858 WP_003044310.1 sulfite exporter TauE/SafE family protein -
  SCAZ3_RS01025 (SCAZ3_08020) - 226108..226896 (-) 789 WP_003044313.1 TrmB family transcriptional regulator -
  SCAZ3_RS12520 - 227451..227556 (-) 106 Protein_211 FeoB small GTPase domain-containing protein -
  SCAZ3_RS01035 (SCAZ3_08030) - 227553..228032 (-) 480 WP_003044319.1 FeoA family protein -
  SCAZ3_RS01040 (SCAZ3_08035) amiE 228243..228977 (-) 735 WP_003044324.1 amino acid ABC transporter ATP-binding protein Regulator
  SCAZ3_RS01045 (SCAZ3_08040) - 228977..229663 (-) 687 WP_003044327.1 amino acid ABC transporter permease -
  SCAZ3_RS01050 (SCAZ3_08045) - 229790..230020 (-) 231 WP_002983885.1 YkuJ family protein -
  SCAZ3_RS01055 (SCAZ3_08050) clpE 230321..232612 (+) 2292 WP_003044330.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SCAZ3_RS01060 (SCAZ3_08055) - 232739..233194 (+) 456 WP_003044333.1 NUDIX hydrolase -
  SCAZ3_RS01065 (SCAZ3_08060) - 233245..233547 (+) 303 WP_003044336.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26746.01 Da        Isoelectric Point: 4.6223

>NTDB_id=54294 SCAZ3_RS01040 WP_003044324.1 228243..228977(-) (amiE) [Streptococcus canis FSL Z3-227]
MTEAIISIKDLHKYYDHNEVLKGIDLDIMPGEVVVIIGPSGSGKSTLLRTMNLLEVPTKGQISFEGVDITDKKNDIFSMR
EKMGMVFQQFNLFSNMTVLENITLSPIKTKGMAKAEADKTALNLLDKVGLSEKAKAYPASLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAKEVADRVIFMDGGVIVEEGNPSQLFDQTKEDRTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=54294 SCAZ3_RS01040 WP_003044324.1 228243..228977(-) (amiE) [Streptococcus canis FSL Z3-227]
ATGACTGAGGCTATTATTTCAATTAAAGACTTGCACAAGTATTATGATCACAATGAAGTGCTTAAAGGAATTGATTTAGA
CATCATGCCAGGAGAGGTTGTGGTGATTATCGGACCTTCTGGTTCTGGGAAATCAACCTTGCTTCGAACCATGAATCTTT
TGGAAGTACCGACCAAGGGACAGATTAGTTTTGAAGGGGTTGATATTACCGATAAGAAGAATGATATTTTTAGCATGCGC
GAAAAAATGGGAATGGTTTTCCAGCAGTTTAACCTCTTTTCCAATATGACTGTTTTAGAAAATATCACCTTATCGCCAAT
CAAAACCAAGGGAATGGCTAAAGCAGAGGCTGACAAAACAGCCTTGAACTTGTTGGACAAAGTTGGATTATCAGAAAAAG
CCAAGGCTTATCCTGCTAGCCTTTCTGGTGGGCAGCAGCAGCGGATTGCCATTGCGCGTGGACTAGCTATGGATCCAGAT
GTTTTACTCTTTGATGAACCAACTTCAGCCCTTGATCCTGAAATGGTGGGCGAGGTCTTAGCAGTTATGCAGGATTTGGC
TAAATCTGGGATGACCATGGTTATTGTGACTCATGAAATGGGCTTTGCCAAGGAAGTGGCTGACCGAGTCATCTTCATGG
ATGGTGGGGTTATTGTAGAAGAAGGCAACCCTAGCCAACTCTTTGACCAAACCAAAGAAGACCGGACCAAAGATTTTTTG
AGCAAGGTTTTATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D4DPJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

33.46

100

0.361
  amiE Streptococcus thermophilus LMD-9

33.46

100

0.361
  amiE Streptococcus salivarius strain HSISS4

33.46

100

0.361

Multiple sequence alignment