Detailed information NTG0542933

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LNN52_RS21435
• Genome accession: NZ_CP086538
• Coordinates: 4423838..4424863 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Ec-042-T5-MAC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4418838..4429863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNN52_RS21425 (LNN52_21415)	rpmE	4421069..4421281 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LNN52_RS21430 (LNN52_21420)	priA	4421484..4423682 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
LNN52_RS21435 (LNN52_21425)	cytR	4423838..4424863 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LNN52_RS21440 (LNN52_21430)	ftsN	4424955..4425914 (+)	960	WP_000068837.1	cell division protein FtsN	-
LNN52_RS21445 (LNN52_21435)	hslV	4426007..4426537 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LNN52_RS21450 (LNN52_21440)	hslU	4426547..4427878 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LNN52_RS21455 (LNN52_21445)	menA	4427945..4428871 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LNN52_RS21460 (LNN52_21450)	rraA	4428964..4429449 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LNN52_RS21465 (LNN52_21455)	zapB	4429534..4429779 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=542933 LNN52_RS21435 WP_000644904.1 4423838..4424863(+) (cytR) [Escherichia coli strain Ec-042-T5-MAC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=542933 LNN52_RS21435 WP_000644904.1 4423838..4424863(+) (cytR) [Escherichia coli strain Ec-042-T5-MAC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628