Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JYA73_RS07190 Genome accession   NZ_CP071104
Coordinates   1531130..1531576 (-) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526130..1536576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS07160 (JYA73_001434) gcvPA 1527056..1528402 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JYA73_RS07165 (JYA73_001435) gcvT 1528422..1529513 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  JYA73_RS07170 (JYA73_001436) - 1529672..1530196 (-) 525 WP_001015125.1 shikimate kinase -
  JYA73_RS07175 (JYA73_001437) - 1530186..1530332 (-) 147 WP_001789879.1 hypothetical protein -
  JYA73_RS07180 (JYA73_001438) comGF 1530429..1530926 (-) 498 WP_211021799.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYA73_RS07185 (JYA73_001439) comGE 1530844..1531143 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JYA73_RS07190 (JYA73_001440) comGD 1531130..1531576 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYA73_RS07195 (JYA73_001441) comGC 1531554..1531865 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  JYA73_RS07200 (JYA73_001442) comGB 1531879..1532949 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYA73_RS07205 (JYA73_001443) comGA 1532921..1533895 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JYA73_RS07210 (JYA73_001444) - 1533920..1535567 (-) 1648 Protein_1425 IS1182 family transposase -
  JYA73_RS07215 (JYA73_001445) - 1535862..1536485 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=542894 JYA73_RS07190 WP_001791207.1 1531130..1531576(-) (comGD) [Staphylococcus aureus strain PS/BAC/317/16/W]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=542894 JYA73_RS07190 WP_001791207.1 1531130..1531576(-) (comGD) [Staphylococcus aureus strain PS/BAC/317/16/W]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986