Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JYA73_RS04255 Genome accession   NZ_CP071104
Coordinates   899956..900942 (+) Length   328 a.a.
NCBI ID   WP_211022055.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 894956..905942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS04230 (JYA73_000847) opp4B 895168..896130 (+) 963 WP_000593421.1 oligopeptide ABC transporter permease -
  JYA73_RS04235 (JYA73_000848) opp4C 896143..897024 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  JYA73_RS04240 (JYA73_000849) trpS 897066..898055 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  JYA73_RS04245 (JYA73_000850) spxA 898350..898745 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JYA73_RS04250 (JYA73_000851) mecA 899116..899835 (+) 720 WP_001217728.1 adaptor protein MecA -
  JYA73_RS04255 (JYA73_000852) coiA 899956..900942 (+) 987 WP_211022055.1 competence protein CoiA family protein Machinery gene
  JYA73_RS04260 (JYA73_000853) pepF 900990..902798 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  JYA73_RS04265 (JYA73_000854) yjbH 903258..904064 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  JYA73_RS04270 (JYA73_000855) - 904087..904452 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  JYA73_RS04275 (JYA73_000856) - 904556..905149 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  JYA73_RS04280 (JYA73_000857) - 905335..905682 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38784.39 Da        Isoelectric Point: 9.5841

>NTDB_id=542885 JYA73_RS04255 WP_211022055.1 899956..900942(+) (coiA) [Staphylococcus aureus strain PS/BAC/317/16/W]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=542885 JYA73_RS04255 WP_211022055.1 899956..900942(+) (coiA) [Staphylococcus aureus strain PS/BAC/317/16/W]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

97.561

100

0.976
  coiA Staphylococcus aureus MW2

97.561

100

0.976