Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JYA70_RS02345 Genome accession   NZ_CP071102
Coordinates   435394..436464 (+) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CI/BAC/25/13/W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430394..441464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA70_RS02315 (JYA70_000463) - 430817..432280 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  JYA70_RS02320 (JYA70_000464) - 432261..432464 (+) 204 WP_000087561.1 YqgQ family protein -
  JYA70_RS02325 (JYA70_000465) - 432461..433447 (+) 987 WP_000161314.1 ROK family glucokinase -
  JYA70_RS02330 (JYA70_000466) - 433447..433776 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JYA70_RS02335 (JYA70_000467) - 433773..434396 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JYA70_RS02340 (JYA70_000468) comGA 434448..435422 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JYA70_RS02345 (JYA70_000469) comGB 435394..436464 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYA70_RS02350 (JYA70_000470) comGC 436478..436789 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JYA70_RS02355 (JYA70_000471) comGD 436767..437213 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYA70_RS02360 (JYA70_000472) comGE 437200..437499 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  JYA70_RS02365 (JYA70_000473) comGF 437417..437914 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYA70_RS02370 (JYA70_000474) - 438011..438157 (+) 147 WP_072399793.1 hypothetical protein -
  JYA70_RS02375 (JYA70_000475) - 438147..438671 (+) 525 WP_001015120.1 shikimate kinase -
  JYA70_RS02380 (JYA70_000476) gcvT 438830..439921 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JYA70_RS02385 (JYA70_000477) gcvPA 439941..441287 (+) 1347 WP_000019694.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=542846 JYA70_RS02345 WP_000776422.1 435394..436464(+) (comGB) [Staphylococcus aureus strain CI/BAC/25/13/W]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=542846 JYA70_RS02345 WP_000776422.1 435394..436464(+) (comGB) [Staphylococcus aureus strain CI/BAC/25/13/W]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1