Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JYA66_RS07780 Genome accession   NZ_CP071100
Coordinates   1611773..1612219 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS/BAC/169/17/W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606773..1617219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA66_RS07750 (JYA66_001549) gcvPA 1607699..1609045 (-) 1347 WP_211020146.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JYA66_RS07755 (JYA66_001550) gcvT 1609065..1610156 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  JYA66_RS07760 (JYA66_001551) - 1610315..1610839 (-) 525 WP_001015123.1 shikimate kinase -
  JYA66_RS07765 (JYA66_001552) - 1610829..1610975 (-) 147 WP_001789879.1 hypothetical protein -
  JYA66_RS07770 (JYA66_001553) comGF 1611072..1611569 (-) 498 WP_211020147.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYA66_RS07775 (JYA66_001554) comGE 1611487..1611786 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JYA66_RS07780 (JYA66_001555) comGD 1611773..1612219 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYA66_RS07785 (JYA66_001556) comGC 1612197..1612508 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JYA66_RS07790 (JYA66_001557) comGB 1612522..1613592 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYA66_RS07795 (JYA66_001558) comGA 1613564..1614538 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JYA66_RS07800 (JYA66_001559) - 1614590..1615213 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JYA66_RS07805 (JYA66_001560) - 1615210..1615539 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JYA66_RS07810 (JYA66_001561) - 1615539..1616525 (-) 987 WP_000161314.1 ROK family glucokinase -
  JYA66_RS07815 (JYA66_001562) - 1616522..1616725 (-) 204 WP_000078677.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=542811 JYA66_RS07780 WP_001788899.1 1611773..1612219(-) (comGD) [Staphylococcus aureus strain PS/BAC/169/17/W]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=542811 JYA66_RS07780 WP_001788899.1 1611773..1612219(-) (comGD) [Staphylococcus aureus strain PS/BAC/169/17/W]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1