Detailed information NTG0542775

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LNN58_RS21445
• Genome accession: NZ_CP086526
• Coordinates: 4424635..4425660 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Ec-042-T20-MAC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4419635..4430660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNN58_RS21435 (LNN58_21425)	rpmE	4421866..4422078 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LNN58_RS21440 (LNN58_21430)	priA	4422281..4424479 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
LNN58_RS21445 (LNN58_21435)	cytR	4424635..4425660 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LNN58_RS21450 (LNN58_21440)	ftsN	4425752..4426711 (+)	960	WP_000068837.1	cell division protein FtsN	-
LNN58_RS21455 (LNN58_21445)	hslV	4426804..4427334 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LNN58_RS21460 (LNN58_21450)	hslU	4427344..4428675 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LNN58_RS21465 (LNN58_21455)	menA	4428742..4429668 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LNN58_RS21470 (LNN58_21460)	rraA	4429761..4430246 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LNN58_RS21475 (LNN58_21465)	zapB	4430331..4430576 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=542775 LNN58_RS21445 WP_000644904.1 4424635..4425660(+) (cytR) [Escherichia coli strain Ec-042-T20-MAC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=542775 LNN58_RS21445 WP_000644904.1 4424635..4425660(+) (cytR) [Escherichia coli strain Ec-042-T20-MAC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628