Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   UMNF18_RS23875 Genome accession   NZ_AGTD01000001
Coordinates   472958..473563 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli UMNF18     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 467958..478563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMNF18_RS23905 (UMNF18_445) rsmS 468663..468824 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  UMNF18_RS23900 (UMNF18_446) priC 468838..469365 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  UMNF18_RS23895 (UMNF18_447) ybaN 469435..469812 (+) 378 WP_001188905.1 DUF454 family protein -
  UMNF18_RS23890 (UMNF18_448) apt 469965..470516 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  UMNF18_RS23885 (UMNF18_449) dnaX 470645..472576 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  UMNF18_RS23880 (UMNF18_450) ybaB 472629..472958 (+) 330 WP_001372467.1 YbaB/EbfC family nucleoid-associated protein -
  UMNF18_RS23875 (UMNF18_451) recR 472958..473563 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  UMNF18_RS23870 (UMNF18_452) htpG 473673..475547 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  UMNF18_RS23865 (UMNF18_453) adk 475728..476372 (+) 645 WP_001220233.1 adenylate kinase -
  UMNF18_RS23860 (UMNF18_455) hemH 476608..477570 (+) 963 WP_001250103.1 ferrochelatase -
  UMNF18_RS23855 (UMNF18_454) aes 477567..478526 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=54277 UMNF18_RS23875 WP_001195025.1 472958..473563(+) (recR) [Escherichia coli UMNF18]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=54277 UMNF18_RS23875 WP_001195025.1 472958..473563(+) (recR) [Escherichia coli UMNF18]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment