Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JY391_RS13460 Genome accession   NZ_CP071070
Coordinates   2802641..2803270 (-) Length   209 a.a.
NCBI ID   WP_211934454.1    Uniprot ID   -
Organism   Citrobacter sedlakii strain 3347689II     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797641..2808270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY391_RS13445 (JY391_13445) helD 2797882..2799936 (-) 2055 WP_211934453.1 DNA helicase IV -
  JY391_RS13450 (JY391_13450) - 2800060..2800506 (+) 447 WP_042288001.1 YccF domain-containing protein -
  JY391_RS13455 (JY391_13455) yccS 2800525..2802687 (+) 2163 WP_200035766.1 YccS family putative transporter -
  JY391_RS13460 (JY391_13460) sxy/tfoX 2802641..2803270 (-) 630 WP_211934454.1 TfoX/Sxy family DNA transformation protein Regulator
  JY391_RS13465 (JY391_13465) sulA 2803488..2803997 (+) 510 WP_042288011.1 SOS-induced cell division inhibitor SulA -
  JY391_RS13470 (JY391_13470) ompA 2804353..2805405 (+) 1053 WP_042288222.1 porin OmpA -
  JY391_RS13475 (JY391_13475) matP 2805484..2805936 (-) 453 WP_211934455.1 macrodomain Ter protein MatP -
  JY391_RS13480 (JY391_13480) - 2806123..2807883 (+) 1761 WP_199956170.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24224.19 Da        Isoelectric Point: 9.7731

>NTDB_id=542671 JY391_RS13460 WP_211934454.1 2802641..2803270(-) (sxy/tfoX) [Citrobacter sedlakii strain 3347689II]
MKVHSYDRINKSQEYLSSLGTIRYRSLFGSYSLTINDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVMLN
YYQVDESLWRDQQKLIRLSKYSLDAALKEKHLRGATQRLKDLPNMTFHLESLLNEAGVYDVSTLRVLGAKMCWLRLRQIN
KSITDKILYILEGAIYGIHEAALPATRRQELAAWVKTLTKEPLFPAKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=542671 JY391_RS13460 WP_211934454.1 2802641..2803270(-) (sxy/tfoX) [Citrobacter sedlakii strain 3347689II]
ATGAAAGTACACTCCTATGACAGGATCAATAAATCACAGGAATATTTATCTTCTCTGGGGACTATCCGTTATCGATCGCT
GTTTGGCAGCTACAGCCTGACCATCAACGACACGGTGTTTGCCATGGTCGCCGATGGCGAGCTTTATCTCCGTGCCTGTG
AACAAAGCGTACAGTACTGCGTAAAGCACTCACCTGTCTGGCTGACCTTTATGAAGCGCGGACGCCCCGTCATGCTCAAT
TACTATCAGGTTGATGAAAGTCTCTGGCGCGATCAGCAAAAACTCATCCGCTTGTCGAAATATTCCCTGGATGCGGCGTT
GAAAGAAAAACACCTGCGGGGGGCAACGCAACGGCTCAAGGATCTGCCAAATATGACCTTTCATCTTGAGAGCCTGCTTA
ACGAAGCGGGCGTTTATGATGTCAGTACGCTCCGTGTTTTGGGCGCCAAAATGTGCTGGCTTCGGTTGAGACAAATCAAC
AAGTCGATTACTGACAAAATCCTCTACATTCTGGAAGGGGCTATTTATGGCATTCATGAAGCGGCGCTCCCGGCGACGCG
TCGCCAGGAGCTTGCGGCGTGGGTTAAGACGCTGACAAAGGAGCCGCTGTTTCCGGCGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.727

100

0.727