Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JY500_RS06145 Genome accession   NZ_CP071060
Coordinates   1321048..1322421 (+) Length   457 a.a.
NCBI ID   WP_206255534.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1316048..1327421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS06125 (JY500_06125) - 1316684..1317508 (+) 825 WP_206255531.1 uracil-DNA glycosylase -
  JY500_RS06130 (JY500_06130) lplT 1317560..1318822 (-) 1263 WP_172198244.1 lysophospholipid transporter LplT -
  JY500_RS06135 (JY500_06135) - 1319059..1319973 (+) 915 WP_172200690.1 LysR family transcriptional regulator -
  JY500_RS06140 (JY500_06140) alr 1319966..1321048 (+) 1083 WP_206255532.1 alanine racemase -
  JY500_RS06145 (JY500_06145) radA 1321048..1322421 (+) 1374 WP_206255534.1 DNA repair protein RadA Machinery gene
  JY500_RS06150 (JY500_06150) tpiA 1322539..1323312 (+) 774 WP_172198251.1 triose-phosphate isomerase -
  JY500_RS06155 (JY500_06155) - 1323388..1323861 (-) 474 WP_172198253.1 MarR family transcriptional regulator -
  JY500_RS06160 (JY500_06160) - 1323866..1324687 (-) 822 WP_206255535.1 M48 family metallopeptidase -
  JY500_RS06165 (JY500_06165) - 1324805..1326199 (-) 1395 WP_206255537.1 transglycosylase SLT domain-containing protein -
  JY500_RS06170 (JY500_06170) - 1326377..1327330 (+) 954 WP_206255539.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48578.07 Da        Isoelectric Point: 7.3314

>NTDB_id=542587 JY500_RS06145 WP_206255534.1 1321048..1322421(+) (radA) [Niveibacterium microcysteis strain HC41]
MAKVKTVYQCTECGAQAPRWQGQCPGCAQWNTLVESIAAPAGGAASRFTALAGEVSQIKKLADFTPQEHSRFATGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALATLSLHCKAVYVSGEESGEQVALRAQRLQLDAAALEMLPEINLERILDT
LKTQKPRLAVIDSIQTLYSEVLQSAPGSVAQVRECAAQLTRFAKQSGCALVLVGHVTKDGSLAGPRVLEHIVDAVLYFEG
DTQSSFRLVRAFKNRFGAVNELGVFAMTDKGLRGVSNPSAIFLSQHEQDVSGACVLVTQEGTRPLLVEVQALVDPAHAPS
PRRLSVGLEQNRLAMLLAVLHRHAGIMCADQDVFVNAVGGVRIGEPAADLAVCLAIVSSLRNKPLRRDLAMFGEVGLAGE
IRPAPRGQERLREAAKLGFRVALVPKANLPKQAIAGIEVIGVDRIEDALSKARELEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=542587 JY500_RS06145 WP_206255534.1 1321048..1322421(+) (radA) [Niveibacterium microcysteis strain HC41]
ATGGCGAAGGTCAAGACGGTTTACCAGTGCACCGAATGCGGTGCGCAGGCGCCGCGCTGGCAGGGGCAGTGCCCCGGCTG
CGCGCAATGGAACACCCTTGTTGAGTCGATTGCAGCACCAGCAGGTGGGGCTGCCAGCCGTTTCACCGCCCTCGCGGGCG
AAGTCAGCCAGATCAAGAAGCTGGCGGATTTCACGCCGCAGGAACACTCGCGCTTTGCGACCGGCATTGAGGAGTTTGAC
CGTGTGCTGGGCGGCGGTCTCGTCGCCGGCGGTGTTGTGCTAATTGGTGGCGATCCCGGCATCGGCAAGTCCACCCTGTT
GCTCCAGGCGCTGGCCACACTGTCGCTGCACTGCAAGGCGGTGTACGTGAGCGGGGAGGAGTCGGGCGAGCAGGTGGCGC
TGCGCGCGCAGCGCCTGCAGCTGGATGCCGCAGCGCTGGAAATGCTGCCGGAGATCAACCTCGAGCGCATTCTCGACACC
CTCAAGACGCAGAAGCCGCGGCTCGCGGTGATCGACTCGATCCAGACGCTGTACTCCGAGGTGCTGCAGTCGGCACCCGG
CTCGGTGGCTCAAGTGCGTGAATGCGCCGCGCAGCTCACCCGGTTTGCCAAGCAGAGCGGGTGTGCGCTGGTGCTGGTAG
GTCATGTCACCAAGGATGGTTCGCTGGCCGGCCCACGTGTGCTGGAGCACATCGTCGATGCGGTGCTGTACTTCGAGGGC
GACACGCAATCGAGCTTCCGTCTGGTGCGCGCGTTCAAGAACCGTTTCGGGGCGGTGAACGAACTGGGCGTCTTTGCCAT
GACCGACAAGGGCTTGCGCGGCGTCAGCAACCCCTCCGCGATCTTCCTGTCGCAGCACGAACAGGATGTTTCGGGCGCGT
GTGTACTGGTGACGCAAGAAGGCACGCGGCCCTTGCTGGTCGAAGTACAGGCGTTGGTGGACCCCGCCCATGCGCCAAGC
CCACGGCGGCTCAGTGTTGGTCTTGAGCAGAACCGTCTGGCGATGCTGCTTGCGGTGCTGCATCGCCATGCCGGCATCAT
GTGCGCGGACCAGGATGTGTTCGTCAATGCGGTGGGCGGTGTGCGGATCGGCGAGCCTGCGGCGGACCTGGCAGTGTGCC
TTGCGATCGTTTCGTCGCTGCGAAACAAGCCGCTGCGTCGCGATTTGGCGATGTTCGGCGAGGTTGGTCTGGCCGGCGAG
ATCCGCCCCGCACCGCGCGGGCAAGAGCGCTTGCGCGAGGCGGCCAAGCTGGGGTTTCGCGTTGCCCTCGTACCGAAGGC
CAATCTGCCGAAGCAGGCGATTGCCGGCATCGAAGTCATCGGAGTCGACCGGATCGAGGATGCGCTGAGCAAGGCGCGCG
AACTCGAGGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.035

100

0.481
  radA Streptococcus mitis NCTC 12261

46.053

99.781

0.46
  radA Streptococcus pneumoniae Rx1

46.053

99.781

0.46
  radA Streptococcus pneumoniae D39

46.053

99.781

0.46
  radA Streptococcus pneumoniae R6

46.053

99.781

0.46
  radA Streptococcus pneumoniae TIGR4

46.053

99.781

0.46
  radA Streptococcus mitis SK321

45.833

99.781

0.457