Detailed information NTG0542583

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JY500_RS02975
• Genome accession: NZ_CP071060
• Coordinates: 646997..648127 (-)
• Length: 376 a.a.
• NCBI ID: WP_206255028.1
• Uniprot ID: -
• Organism: Niveibacterium microcysteis strain HC41
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 641997..653127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JY500_RS02950 (JY500_02950)	-	642443..643270 (-)	828	WP_206255025.1	hypothetical protein	-
JY500_RS02955 (JY500_02955)	-	643620..644237 (+)	618	WP_206255026.1	outer membrane beta-barrel protein	-
JY500_RS02960 (JY500_02960)	-	644370..645305 (+)	936	WP_172201022.1	carbohydrate kinase family protein	-
JY500_RS02965 (JY500_02965)	ftsX	645401..646318 (-)	918	WP_206255027.1	permease-like cell division protein FtsX	-
JY500_RS02970 (JY500_02970)	-	646315..646971 (-)	657	WP_172201016.1	ATP-binding cassette domain-containing protein	-
JY500_RS02975 (JY500_02975)	pilA	646997..648127 (-)	1131	WP_206255028.1	signal recognition particle-docking protein FtsY	Machinery gene
JY500_RS02980 (JY500_02980)	rsmD	648295..648834 (+)	540	WP_172201011.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JY500_RS02985 (JY500_02985)	coaD	648831..649325 (+)	495	WP_172201009.1	pantetheine-phosphate adenylyltransferase	-
JY500_RS02990 (JY500_02990)	-	649343..649594 (+)	252	WP_172201007.1	YfhL family 4Fe-4S dicluster ferredoxin	-
JY500_RS02995 (JY500_02995)	-	649661..651625 (-)	1965	WP_172201005.1	dynamin family protein	-
JY500_RS03000 (JY500_03000)	mutM	651786..652598 (-)	813	WP_206255029.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 39909.74 Da
• Isoelectric Point: 5.8234

>NTDB_id=542583 JY500_RS02975 WP_206255028.1 646997..648127(-) (pilA) [Niveibacterium microcysteis strain HC41]
MFDFFKKKPADSAAPQPSPAAPAPATAPEVAPVEAAPIASTVTAPAAAPETNSAPADARSWAARLRDGLSKTRAKLNAAV
GPTLGADVGDVMSDLFSRRKIDDELLDEIETTLLTADCGVDATQYLIDEMRKRWKRDKLETGEQLKGVLMELLEGLLTPL
QQPLDIHTHKPTIIMLAGVNGSGKTTSIGKLAKRFQAEGKSVLLAAGDTFRAAAREQLQEWGRRNDVTVISQDGGDPAAV
VFDAINAARARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKADPTGPHEVLLVLDSNIGQNALAQLAAFDKAVGVTGL
VVTKLDGTAKGGVLAAIARTNPKPIRFIGVGERIDDMQPFVAREFVEALFDAAPAK

Nucleotide

• Length: 1131 bp

>NTDB_id=542583 JY500_RS02975 WP_206255028.1 646997..648127(-) (pilA) [Niveibacterium microcysteis strain HC41]
ATGTTCGATTTCTTCAAGAAGAAACCCGCCGACAGCGCTGCGCCGCAGCCAAGCCCTGCCGCGCCAGCGCCCGCAACGGC
CCCGGAAGTGGCGCCGGTTGAAGCCGCGCCGATTGCTTCAACGGTAACCGCCCCGGCCGCTGCGCCAGAGACGAACAGCG
CGCCGGCGGACGCACGCTCTTGGGCCGCGCGCCTGCGCGACGGCCTGTCGAAGACCCGCGCGAAGCTGAACGCCGCGGTC
GGCCCGACACTGGGCGCCGACGTCGGCGACGTGATGTCGGACCTGTTCTCACGGCGCAAGATCGACGACGAACTGCTCGA
CGAGATCGAGACCACCCTGCTCACGGCCGACTGCGGTGTCGACGCGACGCAGTACCTGATCGACGAAATGCGCAAGCGCT
GGAAGCGCGACAAGCTCGAAACCGGCGAGCAGCTCAAGGGCGTACTGATGGAACTGCTCGAAGGCCTGCTGACGCCGCTG
CAGCAGCCGCTCGACATCCACACCCACAAGCCGACGATCATCATGCTGGCCGGCGTGAATGGCTCCGGCAAGACCACATC
GATCGGGAAACTGGCCAAGCGCTTCCAGGCCGAAGGCAAGAGCGTGTTGCTTGCGGCGGGCGACACCTTCCGCGCCGCCG
CCCGAGAGCAACTGCAGGAATGGGGCCGCCGCAATGATGTGACGGTGATTTCGCAAGATGGCGGCGACCCGGCCGCCGTC
GTGTTCGACGCCATCAACGCCGCACGCGCCCGCGGCATCGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCTACGCA
ACTGCACCTGATGGAAGAGATCGCCAAGGTGCGTCGCGTAATCCAGAAGGCGGACCCGACCGGGCCGCATGAAGTGTTGC
TGGTGCTCGACTCCAACATCGGCCAGAACGCGCTGGCGCAACTGGCCGCCTTCGACAAGGCGGTTGGCGTCACCGGACTG
GTCGTGACAAAGCTCGACGGCACCGCCAAGGGCGGCGTGCTCGCCGCCATCGCACGTACCAACCCGAAGCCGATCCGCTT
CATCGGCGTGGGCGAGCGCATCGACGACATGCAGCCCTTCGTGGCGCGCGAATTCGTCGAGGCGCTGTTCGACGCCGCGC
CTGCCAAGTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (85-151)

• SRP54-type protein, GTPase domain (SRP54) (171-370)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	57.143	94.947	0.543