Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LNN50_RS00875 Genome accession   NZ_CP086510
Coordinates   183204..184208 (+) Length   334 a.a.
NCBI ID   WP_039023208.1    Uniprot ID   -
Organism   Escherichia coli strain Ec-050-T0     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 178204..189208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN50_RS00855 (LNN50_00855) dppA 178367..179974 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  LNN50_RS26215 - 180008..180118 (-) 111 Protein_169 hypothetical protein -
  LNN50_RS00860 (LNN50_00860) dppB 180282..181301 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  LNN50_RS00865 (LNN50_00865) dppC 181311..182213 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  LNN50_RS00870 (LNN50_00870) amiE 182224..183207 (+) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  LNN50_RS00875 (LNN50_00875) amiE 183204..184208 (+) 1005 WP_039023208.1 dipeptide ABC transporter ATP-binding subunit DppF Regulator
  LNN50_RS00880 (LNN50_00880) yhjV 184238..185509 (-) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  LNN50_RS00885 (LNN50_00885) ldrD 185985..186092 (+) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  LNN50_RS00890 (LNN50_00890) bcsG 186179..187858 (-) 1680 WP_000191619.1 cellulose biosynthesis protein BcsG -
  LNN50_RS00895 (LNN50_00895) bcsF 187855..188046 (-) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37507.38 Da        Isoelectric Point: 8.7508

>NTDB_id=542550 LNN50_RS00875 WP_039023208.1 183204..184208(+) (amiE) [Escherichia coli strain Ec-050-T0]
MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELY
YQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC
VEKGTKDQIFNNPCHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQL
VACFAVDQDENPQR

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=542550 LNN50_RS00875 WP_039023208.1 183204..184208(+) (amiE) [Escherichia coli strain Ec-050-T0]
ATGAGTACGCAAGAGGCCACCCTGCAACAACCGCTGTTGCAGGCTATCGACCTGAAAAAACATTATCCGGTGAAGAAAGG
CATGTTCGCGCCGGAACGTCTGGTTAAAGCGCTGGATGGCGTTTCGTTTAACCTTGAACGTGGCAAAACGCTGGCAGTAG
TGGGCGAATCTGGCTGCGGTAAATCGACCCTCGGTCGGTTGCTGACGATGATTGAAATGCCCACCGGTGGCGAGCTGTAT
TACCAGGGGCAGGATCTGCTTAAGCACGATCCGCAGGCGCAGAAGCTGCGTCGGCAGAAAATCCAGATCGTCTTCCAGAA
CCCTTACGGTTCGCTGAATCCGCGTAAAAAAGTCGGGCAAATTCTTGAAGAGCCGCTGCTGATCAACACCAGCTTAAGCA
AAGAACAGCGTCGGGAAAAAGCCCTGTCGATGATGGCGAAAGTCGGCCTGAAAACCGAGCACTATGACCGCTATCCGCAT
ATGTTCTCCGGCGGTCAGCGTCAGCGTATCGCCATCGCCCGTGGTCTGATGCTCGACCCGGATGTGGTGATTGCCGATGA
ACCGGTTTCCGCGCTGGATGTTTCAGTGCGCGCGCAGGTGCTGAATCTGATGATGGATTTGCAGCAGGAGTTGGGGCTGT
CTTATGTCTTTATCTCCCACGACCTGTCGGTGGTGGAGCACATTGCTGATGAAGTGATGGTGATGTACCTGGGCCGCTGC
GTGGAGAAGGGAACGAAAGACCAAATCTTCAATAACCCGTGCCATCCGTACACTCAGGCGCTACTTTCCGCGACGCCGCG
CCTGAACCCGGACGATCGCCGCGAGCGCATCAAGCTCAGCGGTGAACTACCAAGCCCACTGAATCCACCGCCGGGTTGCG
CCTTCAACGCCCGCTGTCGTCGGCGCTTCGGCCCCTGCACCCAGTTGCAGCCGCAGCTAAAAGACTACGGCGGTCAACTG
GTAGCTTGTTTTGCTGTTGATCAGGATGAAAATCCGCAGCGTTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(241-306)

ABC transporter (ABC_tran)

(38-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

40.878

88.623

0.362