Detailed information NTG0542549

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: JS609_RS19300
• Genome accession: NZ_CP071043
• Coordinates: 3730817..3731962 (+)
• Length: 381 a.a.
• NCBI ID: WP_213414789.1
• Uniprot ID: -
• Organism: Bacillus subtilis isolate ELA2001105
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3725817..3736962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JS609_RS19280 (JS609_03791)	albF	3725833..3727113 (+)	1281	WP_029318696.1	M16 family metallopeptidase	-
JS609_RS19285 (JS609_03792)	albG	3727110..3727811 (+)	702	WP_225722130.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
JS609_RS19290 (JS609_03793)	ywhL	3727817..3729193 (-)	1377	WP_041351296.1	YncE family protein	-
JS609_RS19295 (JS609_03794)	ywhK	3729232..3730587 (-)	1356	WP_225722131.1	YncE family protein	-
JS609_RS21240	-	3730584..3730814 (-)	231	WP_033883387.1	hypothetical protein	-
JS609_RS19300 (JS609_03795)	rapF	3730817..3731962 (+)	1146	WP_213414789.1	tetratricopeptide repeat protein	Regulator
JS609_RS19305 (JS609_03796)	-	3731946..3732065 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
JS609_RS19310	-	3732180..3732624 (+)	445	Protein_3758	YbaK/EbsC family protein	-
JS609_RS19315 (JS609_03797)	speB	3732661..3733533 (-)	873	WP_003227545.1	agmatinase	-
JS609_RS19320 (JS609_03798)	speE	3733594..3734424 (-)	831	WP_003227543.1	spermidine synthase	-
JS609_RS19325 (JS609_03799)	pbpG	3734627..3736702 (+)	2076	WP_017696252.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45593.28 Da
• Isoelectric Point: 5.1616

>NTDB_id=542549 JS609_RS19300 WP_213414789.1 3730817..3731962(+) (rapF) [Bacillus subtilis isolate ELA2001105]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQKPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=542549 JS609_RS19300 WP_213414789.1 3730817..3731962(+) (rapF) [Bacillus subtilis isolate ELA2001105]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGAATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGAAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

• Tetratricopeptide repeat (TPR_8) (263-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572