Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JS609_RS13930 Genome accession   NZ_CP071043
Coordinates   2690112..2690858 (-) Length   248 a.a.
NCBI ID   WP_213414577.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2685112..2695858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS13905 (JS609_02731) mreC 2685521..2686393 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  JS609_RS13910 (JS609_02732) mreB 2686424..2687437 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JS609_RS13915 (JS609_02733) radC 2687529..2688224 (-) 696 WP_015251546.1 RadC family protein -
  JS609_RS13920 (JS609_02734) maf 2688261..2688830 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  JS609_RS13925 (JS609_02735) spoIIB 2688983..2689978 (-) 996 WP_225722069.1 stage II sporulation protein SpoIIB -
  JS609_RS13930 (JS609_02736) comC 2690112..2690858 (-) 747 WP_213414577.1 prepilin peptidase Machinery gene
  JS609_RS13935 (JS609_02737) folC 2690997..2692289 (-) 1293 WP_163189548.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  JS609_RS13940 (JS609_02738) valS 2692349..2694991 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  JS609_RS13945 (JS609_02739) - 2695437..2695628 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26441.02 Da        Isoelectric Point: 9.7944

>NTDB_id=542532 JS609_RS13930 WP_213414577.1 2690112..2690858(-) (comC) [Bacillus subtilis isolate ELA2001105]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=542532 JS609_RS13930 WP_213414577.1 2690112..2690858(-) (comC) [Bacillus subtilis isolate ELA2001105]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992