Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JS609_RS12570 Genome accession   NZ_CP071043
Coordinates   2454154..2454921 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis isolate ELA2001105     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2449154..2459921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS12550 (JS609_02476) ppsR 2449329..2450141 (-) 813 WP_032722128.1 pyruvate, water dikinase regulatory protein -
  JS609_RS12555 (JS609_02477) ccpN 2450167..2450805 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  JS609_RS12560 (JS609_02478) glyS 2450938..2452977 (-) 2040 WP_213414612.1 glycine--tRNA ligase subunit beta -
  JS609_RS12565 (JS609_02479) glyQ 2452970..2453857 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  JS609_RS12570 (JS609_02480) recO 2454154..2454921 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  JS609_RS12575 (JS609_02481) yqzL 2454958..2455101 (-) 144 WP_003230053.1 YqzL family protein -
  JS609_RS12580 (JS609_02482) era 2455249..2456154 (-) 906 WP_003230051.1 GTPase Era -
  JS609_RS12585 (JS609_02483) - 2456135..2456545 (-) 411 WP_003230049.1 cytidine deaminase -
  JS609_RS12590 (JS609_02484) unpK 2456664..2457035 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  JS609_RS12595 (JS609_02485) ybeY 2457016..2457489 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  JS609_RS12600 (JS609_02486) pgpH 2457490..2459625 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=542524 JS609_RS12570 WP_014477369.1 2454154..2454921(-) (recO) [Bacillus subtilis isolate ELA2001105]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=542524 JS609_RS12570 WP_014477369.1 2454154..2454921(-) (recO) [Bacillus subtilis isolate ELA2001105]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996