Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JS609_RS12235 Genome accession   NZ_CP071043
Coordinates   2398886..2399221 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate ELA2001105     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393886..2404221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS12215 (JS609_02408) gcvT 2394479..2395567 (-) 1089 WP_080529534.1 glycine cleavage system aminomethyltransferase GcvT -
  JS609_RS12220 (JS609_02409) hepAA 2396008..2397681 (+) 1674 WP_003230203.1 DEAD/DEAH box helicase -
  JS609_RS12225 (JS609_02410) yqhG 2397702..2398496 (+) 795 WP_003230200.1 YqhG family protein -
  JS609_RS12230 (JS609_02411) sinI 2398679..2398852 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  JS609_RS12235 (JS609_02412) sinR 2398886..2399221 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  JS609_RS12240 (JS609_02413) tasA 2399314..2400099 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  JS609_RS12245 (JS609_02414) sipW 2400163..2400735 (-) 573 WP_003230181.1 signal peptidase I SipW -
  JS609_RS12250 (JS609_02415) tapA 2400719..2401480 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  JS609_RS12255 (JS609_02416) yqzG 2401752..2402078 (+) 327 WP_029317915.1 YqzG/YhdC family protein -
  JS609_RS12260 (JS609_02417) spoIITA 2402120..2402299 (-) 180 WP_213414620.1 YqzE family protein -
  JS609_RS12265 (JS609_02418) comGG 2402370..2402744 (-) 375 WP_225722048.1 ComG operon protein ComGG Machinery gene
  JS609_RS12270 (JS609_02419) comGF 2402745..2403128 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  JS609_RS12275 (JS609_02420) comGE 2403154..2403501 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  JS609_RS12280 (JS609_02421) comGD 2403485..2403916 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  JS609_RS12285 (JS609_02422) comGC 2403906..2404202 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=542516 JS609_RS12235 WP_003226345.1 2398886..2399221(+) (sinR) [Bacillus subtilis isolate ELA2001105]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=542516 JS609_RS12235 WP_003226345.1 2398886..2399221(+) (sinR) [Bacillus subtilis isolate ELA2001105]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1