Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JS609_RS12040 Genome accession   NZ_CP071043
Coordinates   2364257..2365060 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2359257..2370060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS12015 (JS609_02368) glpQB 2360402..2361133 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  JS609_RS12020 (JS609_02369) yqiI 2361212..2361832 (-) 621 WP_225722043.1 N-acetylmuramoyl-L-alanine amidase family protein -
  JS609_RS12025 (JS609_02370) yqiH 2361847..2362140 (-) 294 WP_003230284.1 lipoprotein -
  JS609_RS12030 - 2362448..2362600 (+) 153 WP_225722044.1 hypothetical protein -
  JS609_RS12035 (JS609_02371) yqiG 2362673..2363791 (+) 1119 WP_225722045.1 NADH-dependent flavin oxidoreductase -
  JS609_RS12040 (JS609_02373) spo0A 2364257..2365060 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  JS609_RS12045 (JS609_02374) spoIVB 2365336..2366616 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  JS609_RS12050 (JS609_02375) recN 2366791..2368521 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  JS609_RS12055 (JS609_02376) argR 2368558..2369007 (-) 450 WP_003230265.1 arginine repressor ArgR -
  JS609_RS12060 (JS609_02377) yqxC 2369105..2369950 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=542513 JS609_RS12040 WP_003226427.1 2364257..2365060(-) (spo0A) [Bacillus subtilis isolate ELA2001105]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=542513 JS609_RS12040 WP_003226427.1 2364257..2365060(-) (spo0A) [Bacillus subtilis isolate ELA2001105]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1