Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JS609_RS11055 Genome accession   NZ_CP071043
Coordinates   2186789..2187409 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2181789..2192409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS11015 (JS609_02169) ptsA 2182922..2183428 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  JS609_RS11020 (JS609_02170) ypqA 2183564..2183983 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  JS609_RS11025 (JS609_02171) sppG 2184004..2184381 (-) 378 WP_004398696.1 YppG family protein -
  JS609_RS11030 (JS609_02172) yppF 2184569..2184757 (+) 189 WP_003230690.1 YppF family protein -
  JS609_RS11035 (JS609_02173) yppE 2184796..2185167 (-) 372 WP_225722031.1 YppE family protein -
  JS609_RS11040 (JS609_02174) yppD 2185213..2185458 (-) 246 WP_004398488.1 YppD family protein -
  JS609_RS11045 (JS609_02175) sspM 2185657..2185761 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  JS609_RS11050 (JS609_02176) yppC 2185786..2186748 (-) 963 WP_131227527.1 DUF2515 domain-containing protein -
  JS609_RS11055 (JS609_02177) recU 2186789..2187409 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  JS609_RS11060 (JS609_02178) ponA 2187431..2190181 (+) 2751 WP_225722032.1 transglycosylase domain-containing protein -
  JS609_RS11065 (JS609_02179) ypoC 2190257..2190751 (-) 495 WP_029726783.1 YpoC family protein -
  JS609_RS11070 (JS609_02180) nth 2190748..2191407 (-) 660 WP_009967580.1 endonuclease III -
  JS609_RS11075 (JS609_02181) dnaD 2191426..2192124 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=542512 JS609_RS11055 WP_004399067.1 2186789..2187409(+) (recU) [Bacillus subtilis isolate ELA2001105]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=542512 JS609_RS11055 WP_004399067.1 2186789..2187409(+) (recU) [Bacillus subtilis isolate ELA2001105]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1