Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JS609_RS07790 Genome accession   NZ_CP071043
Coordinates   1485822..1486100 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate ELA2001105     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480822..1491100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS07770 (JS609_01529) panEB 1482010..1482921 (+) 912 WP_225721977.1 ketopantoate reductase family protein -
  JS609_RS07775 (JS609_01530) ampS 1482955..1484187 (-) 1233 WP_225721978.1 aminopeptidase -
  JS609_RS07780 (JS609_01531) ykpC 1484296..1484430 (-) 135 WP_003238865.1 protein YkpC -
  JS609_RS07785 (JS609_01532) mreBH 1484531..1485538 (-) 1008 WP_213414458.1 rod-share determining protein MreBH -
  JS609_RS07790 (JS609_01533) abrB 1485822..1486100 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  JS609_RS07795 (JS609_01534) kinC 1486290..1487576 (+) 1287 WP_225721979.1 two-component sensor histidine kinase KinC -
  JS609_RS07800 (JS609_01535) ykqA 1487592..1488425 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  JS609_RS07805 (JS609_01536) ktrC 1488488..1489153 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  JS609_RS07810 (JS609_01537) ade 1489309..1491042 (+) 1734 WP_080529276.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=542507 JS609_RS07790 WP_003244728.1 1485822..1486100(+) (abrB) [Bacillus subtilis isolate ELA2001105]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=542507 JS609_RS07790 WP_003244728.1 1485822..1486100(+) (abrB) [Bacillus subtilis isolate ELA2001105]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576