Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JS609_RS05580 Genome accession   NZ_CP071043
Coordinates   1082559..1083137 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077559..1088137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS21275 - 1078070..1078585 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  JS609_RS21280 - 1078826..1079452 (-) 627 Protein_1030 protoglobin domain-containing protein -
  JS609_RS05565 (JS609_01093) comW 1079507..1081036 (-) 1530 WP_225721942.1 FAD-dependent oxidoreductase -
  JS609_RS05570 (JS609_01094) yhxC 1081148..1082005 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  JS609_RS05575 (JS609_01095) yhzC 1082033..1082266 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  JS609_RS05580 (JS609_01096) comK 1082559..1083137 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  JS609_RS05585 (JS609_01097) yhxD 1083184..1084083 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  JS609_RS05590 (JS609_01098) yhjA 1084300..1084569 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  JS609_RS05595 (JS609_01099) yhjB 1084613..1086082 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  JS609_RS05600 (JS609_01100) yhjC 1086079..1086279 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  JS609_RS05605 (JS609_01101) - 1086478..1086849 (-) 372 WP_014476361.1 hypothetical protein -
  JS609_RS05610 (JS609_01102) yhjE 1087001..1087624 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  JS609_RS05615 (JS609_01103) lepB 1087626..1088132 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=542493 JS609_RS05580 WP_029317573.1 1082559..1083137(+) (comK) [Bacillus subtilis isolate ELA2001105]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=542493 JS609_RS05580 WP_029317573.1 1082559..1083137(+) (comK) [Bacillus subtilis isolate ELA2001105]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995