Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JS608_RS10920 Genome accession   NZ_CP071042
Coordinates   2228913..2229347 (+) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2223913..2234347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS10915 (JS608_02175) - 2227413..2228624 (-) 1212 WP_057080788.1 cytochrome P450 -
  JS608_RS10920 (JS608_02176) nucA/comI 2228913..2229347 (+) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JS608_RS10925 (JS608_02177) - 2229407..2230162 (+) 756 WP_003154084.1 YoaK family protein -
  JS608_RS10930 (JS608_02178) - 2230195..2230557 (-) 363 WP_003154082.1 hypothetical protein -
  JS608_RS10935 (JS608_02179) - 2230750..2232078 (-) 1329 WP_024085327.1 S8 family peptidase -
  JS608_RS20585 - 2232258..2232493 (+) 236 Protein_2110 hypothetical protein -
  JS608_RS10940 (JS608_02180) - 2232749..2233456 (+) 708 WP_079004849.1 poly-gamma-glutamate hydrolase family protein -
  JS608_RS10945 (JS608_02181) - 2233517..2233969 (+) 453 WP_014305039.1 OsmC family protein -
  JS608_RS10950 (JS608_02182) - 2233983..2234336 (-) 354 WP_003154073.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=542445 JS608_RS10920 WP_003154085.1 2228913..2229347(+) (nucA/comI) [Bacillus amyloliquefaciens isolate ELA1901024]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=542445 JS608_RS10920 WP_003154085.1 2228913..2229347(+) (nucA/comI) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486