Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JS608_RS10360 Genome accession   NZ_CP071042
Coordinates   2053698..2054597 (+) Length   299 a.a.
NCBI ID   WP_063174819.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2048698..2059597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS10340 (JS608_02062) - 2049389..2051092 (+) 1704 WP_225630106.1 glycosyl transferase -
  JS608_RS10345 (JS608_02063) - 2051089..2051370 (+) 282 WP_063174818.1 FlhB-like flagellar biosynthesis protein -
  JS608_RS10350 (JS608_02064) sucC 2051545..2052702 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  JS608_RS10355 (JS608_02065) sucD 2052731..2053633 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  JS608_RS10360 (JS608_02066) dprA 2053698..2054597 (+) 900 WP_063174819.1 DNA-processing protein DprA Machinery gene
  JS608_RS10365 (JS608_02067) topA 2054779..2056854 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  JS608_RS10370 (JS608_02068) trmFO 2056919..2058226 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JS608_RS10375 (JS608_02069) xerC 2058296..2059213 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32791.85 Da        Isoelectric Point: 7.4812

>NTDB_id=542441 JS608_RS10360 WP_063174819.1 2053698..2054597(+) (dprA) [Bacillus amyloliquefaciens isolate ELA1901024]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSCYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=542441 JS608_RS10360 WP_063174819.1 2053698..2054597(+) (dprA) [Bacillus amyloliquefaciens isolate ELA1901024]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAGGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTTATT
CCGATTTCATCAAGCTGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378