Detailed information NTG0054244

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: UMNF18_RS10340
• Genome accession: NZ_AGTD01000001
• Coordinates: 3346060..3347052 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli UMNF18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3341060..3352052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UMNF18_RS10360 (UMNF18_3540)	otnK	3341835..3343097 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
UMNF18_RS10355 (UMNF18_3541)	ygbL	3343094..3343732 (+)	639	WP_001278994.1	aldolase	-
UMNF18_RS10350 (UMNF18_3542)	ygbM	3343737..3344513 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
UMNF18_RS10345 (UMNF18_3543)	ygbN	3344602..3345966 (+)	1365	WP_000104459.1	GntP family transporter	-
UMNF18_RS10340 (UMNF18_3544)	rpoS	3346060..3347052 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
UMNF18_RS10335 (UMNF18_3545)	nlpD	3347115..3348209 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
UMNF18_RS10330 (UMNF18_3547)	pcm	3348394..3349020 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
UMNF18_RS10325 (UMNF18_3548)	surE	3349014..3349775 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
UMNF18_RS10320 (UMNF18_3549)	truD	3349756..3350805 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
UMNF18_RS10315 (UMNF18_3550)	ispF	3350802..3351281 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
UMNF18_RS10310 (UMNF18_3551)	ispD	3351281..3351991 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=54244 UMNF18_RS10340 WP_000081550.1 3346060..3347052(-) (rpoS) [Escherichia coli UMNF18]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=54244 UMNF18_RS10340 WP_000081550.1 3346060..3347052(-) (rpoS) [Escherichia coli UMNF18]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715