Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   JS608_RS09395 Genome accession   NZ_CP071042
Coordinates   1819327..1819923 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814327..1824923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS09365 (JS608_01865) - 1814541..1814996 (+) 456 WP_014304922.1 flavodoxin -
  JS608_RS09370 (JS608_01866) dapD 1815078..1815788 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  JS608_RS09375 (JS608_01867) - 1815859..1816983 (+) 1125 WP_069448704.1 N-acetyldiaminopimelate deacetylase -
  JS608_RS09380 (JS608_01868) - 1817044..1817289 (+) 246 WP_003154596.1 YkuS family protein -
  JS608_RS09385 (JS608_01869) - 1817323..1818129 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  JS608_RS09390 (JS608_01870) - 1818417..1818875 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  JS608_RS09395 (JS608_01871) rok 1819327..1819923 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  JS608_RS09400 (JS608_01872) - 1819944..1820936 (-) 993 WP_003154589.1 hypothetical protein -
  JS608_RS09405 (JS608_01873) - 1821082..1821683 (+) 602 Protein_1804 molybdenum cofactor guanylyltransferase -
  JS608_RS09410 (JS608_01874) - 1821735..1822754 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  JS608_RS09415 (JS608_01875) glp 1822772..1824063 (+) 1292 Protein_1806 gephyrin-like molybdotransferase Glp -
  JS608_RS09420 (JS608_01876) mobB 1824024..1824545 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=542439 JS608_RS09395 WP_003154591.1 1819327..1819923(+) (rok) [Bacillus amyloliquefaciens isolate ELA1901024]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=542439 JS608_RS09395 WP_003154591.1 1819327..1819923(+) (rok) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843