Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JS608_RS09295 Genome accession   NZ_CP071042
Coordinates   1803461..1803925 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798461..1808925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS09275 (JS608_01847) - 1798940..1800760 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  JS608_RS09280 (JS608_01848) - 1800776..1801956 (-) 1181 Protein_1779 aminotransferase A -
  JS608_RS09285 (JS608_01849) - 1802157..1802318 (-) 162 WP_007409608.1 hypothetical protein -
  JS608_RS09290 (JS608_01850) cheV 1802507..1803418 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  JS608_RS09295 (JS608_01851) kre 1803461..1803925 (-) 465 WP_003154622.1 YkyB family protein Regulator
  JS608_RS09300 (JS608_01852) - 1804048..1805340 (-) 1293 WP_043867050.1 MFS transporter -
  JS608_RS09305 (JS608_01853) - 1805416..1805910 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  JS608_RS09310 (JS608_01854) - 1805985..1806848 (-) 864 WP_063174788.1 metallophosphoesterase -
  JS608_RS09315 (JS608_01855) fadH 1806992..1807755 (+) 764 Protein_1786 2,4-dienoyl-CoA reductase -
  JS608_RS09320 - 1807866..1808414 (+) 549 Protein_1787 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=542438 JS608_RS09295 WP_003154622.1 1803461..1803925(-) (kre) [Bacillus amyloliquefaciens isolate ELA1901024]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=542438 JS608_RS09295 WP_003154622.1 1803461..1803925(-) (kre) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929