Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JS608_RS04010 Genome accession   NZ_CP071042
Coordinates   818186..819139 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 813186..824139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS03985 (JS608_00794) - 813230..814663 (+) 1434 WP_161625271.1 HAMP domain-containing sensor histidine kinase -
  JS608_RS03990 (JS608_00795) rapC 814816..815964 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  JS608_RS03995 (JS608_00796) phrC 815948..816067 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JS608_RS04000 - 816217..816327 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  JS608_RS04005 (JS608_00797) - 816407..817771 (-) 1365 WP_003156333.1 aspartate kinase -
  JS608_RS04010 (JS608_00798) ceuB 818186..819139 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  JS608_RS04015 (JS608_00799) - 819129..820076 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  JS608_RS04020 (JS608_00800) - 820070..820828 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  JS608_RS04025 (JS608_00801) - 820850..821794 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  JS608_RS04030 (JS608_00802) - 821836..823260 (-) 1425 WP_048367708.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=542421 JS608_RS04010 WP_003156332.1 818186..819139(+) (ceuB) [Bacillus amyloliquefaciens isolate ELA1901024]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=542421 JS608_RS04010 WP_003156332.1 818186..819139(+) (ceuB) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533