Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   JS608_RS03825 Genome accession   NZ_CP071042
Coordinates   774017..774181 (+) Length   54 a.a.
NCBI ID   WP_269465305.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 769017..779181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS03820 srfAB 770908..774000 (+) 3093 Protein_719 surfactin non-ribosomal peptide synthetase SrfAB -
  JS608_RS03825 comS 774017..774181 (+) 165 WP_269465305.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6264.26 Da        Isoelectric Point: 11.7559

>NTDB_id=542418 JS608_RS03825 WP_269465305.1 774017..774181(+) (comS) [Bacillus amyloliquefaciens isolate ELA1901024]
MRPRRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=542418 JS608_RS03825 WP_269465305.1 774017..774181(+) (comS) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAGACCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5