Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JS608_RS03795 Genome accession   NZ_CP071042
Coordinates   756966..757403 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 751966..762403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS03755 - 752547..752711 (-) 165 Protein_706 molybdopterin dinucleotide binding domain-containing protein -
  JS608_RS03760 (JS608_00752) - 752824..754026 (+) 1203 WP_057080005.1 GTP-binding protein -
  JS608_RS03765 (JS608_00753) - 754091..755227 (+) 1137 WP_069013092.1 zinc-dependent alcohol dehydrogenase -
  JS608_RS03770 (JS608_00754) - 755242..755676 (+) 435 WP_057080003.1 RDD family protein -
  JS608_RS03775 (JS608_00755) - 755793..756068 (+) 276 WP_369719109.1 YckD family protein -
  JS608_RS20655 (JS608_00756) - 756172..756288 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  JS608_RS03785 - 756287..756505 (+) 219 Protein_712 family 1 glycosylhydrolase -
  JS608_RS03790 (JS608_00757) nin/comJ 756546..756944 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  JS608_RS03795 (JS608_00758) nucA/comI 756966..757403 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JS608_RS03800 (JS608_00759) hxlB 757762..758319 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  JS608_RS03805 (JS608_00760) hxlA 758316..758950 (-) 635 Protein_716 3-hexulose-6-phosphate synthase -
  JS608_RS03810 (JS608_00761) - 759182..759544 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=542417 JS608_RS03795 WP_003156588.1 756966..757403(-) (nucA/comI) [Bacillus amyloliquefaciens isolate ELA1901024]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=542417 JS608_RS03795 WP_003156588.1 756966..757403(-) (nucA/comI) [Bacillus amyloliquefaciens isolate ELA1901024]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641