Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JS608_RS02250 Genome accession   NZ_CP071042
Coordinates   442925..443215 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 437925..448215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS02210 (JS608_00444) darA 437942..438271 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  JS608_RS02215 (JS608_00445) - 438284..438724 (+) 441 WP_004264730.1 YaaR family protein -
  JS608_RS02220 (JS608_00446) holB 438736..439725 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  JS608_RS02225 (JS608_00447) ricT 439728..440555 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  JS608_RS02230 (JS608_00448) yabA 440570..440929 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  JS608_RS02235 (JS608_00449) - 440990..441733 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JS608_RS02240 (JS608_00450) - 441720..442019 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  JS608_RS02245 (JS608_00451) rsmI 441994..442875 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JS608_RS02250 (JS608_00452) abrB 442925..443215 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  JS608_RS02255 (JS608_00453) metG 443698..445689 (+) 1992 WP_004264704.1 methionine--tRNA ligase -
  JS608_RS02260 (JS608_00454) - 445765..446532 (+) 768 WP_004264700.1 TatD family hydrolase -
  JS608_RS02265 (JS608_00455) - 446667..447992 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=542412 JS608_RS02250 WP_169510469.1 442925..443215(-) (abrB) [Bacillus amyloliquefaciens isolate ELA1901024]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=542412 JS608_RS02250 WP_169510469.1 442925..443215(-) (abrB) [Bacillus amyloliquefaciens isolate ELA1901024]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979