Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | C695_RS02365 | Genome accession | NC_018937 |
| Coordinates | 475830..476093 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | T0EUE0 |
| Organism | Helicobacter pylori Rif1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 470830..481093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C695_RS02340 (C695_02305) | - | 473400..474068 (+) | 669 | WP_001862498.1 | AAA family ATPase | - |
| C695_RS02345 | - | 474046..474833 (+) | 788 | Protein_434 | integrase | - |
| C695_RS02350 (C695_02320) | - | 474836..475066 (+) | 231 | WP_000189081.1 | hypothetical protein | - |
| C695_RS02355 (C695_02325) | - | 475059..475537 (+) | 479 | Protein_436 | hypothetical protein | - |
| C695_RS02360 (C695_02330) | comB2 | 475534..475818 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| C695_RS02365 (C695_02335) | comB3 | 475830..476093 (+) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| C695_RS02370 (C695_02340) | - | 476105..476341 (+) | 237 | WP_001168532.1 | hypothetical protein | - |
| C695_RS02375 (C695_02345) | - | 476341..478917 (+) | 2577 | WP_000893960.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| C695_RS08805 (C695_02350) | - | 478914..479054 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| C695_RS02385 (C695_02355) | - | 479047..479532 (+) | 486 | Protein_442 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=54232 C695_RS02365 WP_001177716.1 475830..476093(+) (comB3) [Helicobacter pylori Rif1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=54232 C695_RS02365 WP_001177716.1 475830..476093(+) (comB3) [Helicobacter pylori Rif1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |